Package org.mitre.medfacts.i2b2.training

Examples of org.mitre.medfacts.i2b2.training.TrainingInstance.addFeature()

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                  trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_left");
                  if ((conceptBeginTokenOffset - cueWordBegin) < 4) {
                      trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_left_3");
                  }
              } else if (cueWordBegin > conceptEndTokenOffset) {
                    trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right");
                    if ((cueWordEnd - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right_3");
                    }
              } else {
                  trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_within");
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                      trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_left_3");
                  }
              } else if (cueWordBegin > conceptEndTokenOffset) {
                    trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right");
                    if ((cueWordEnd - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right_3");
                    }
              } else {
                  trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_within");
              }
            }
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                    trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right");
                    if ((cueWordEnd - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_right_3");
                    }
              } else {
                  trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_within");
              }
            }
            if (checkForEnabledFeature("cueWordTextValue"))
            {
              trainingInstance.addFeature("cueWordTextValue_" + escapedCueWordText);
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                  trainingInstance.addFeature("cueWordClassPositional_" + escapedCueWordClass + "_within");
              }
            }
            if (checkForEnabledFeature("cueWordTextValue"))
            {
              trainingInstance.addFeature("cueWordTextValue_" + escapedCueWordText);
            }
            if (checkForEnabledFeature("cueWordTypeValue") && cueWord.getCueWordType() != null)
            {
              trainingInstance.addFeature("cueWordTypeValue_" + cueWord.getCueWordType().toString());
            }
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            {
              trainingInstance.addFeature("cueWordTextValue_" + escapedCueWordText);
            }
            if (checkForEnabledFeature("cueWordTypeValue") && cueWord.getCueWordType() != null)
            {
              trainingInstance.addFeature("cueWordTypeValue_" + cueWord.getCueWordType().toString());
            }
            if (checkForEnabledFeature("cueWordClassValue") && cueWord.getCueWordClass() != null && !cueWord.getCueWordClass().isEmpty())
            {
              trainingInstance.addFeature("cueWordClassValue_" + escapedCueWordClass);
            }
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            {
              trainingInstance.addFeature("cueWordTypeValue_" + cueWord.getCueWordType().toString());
            }
            if (checkForEnabledFeature("cueWordClassValue") && cueWord.getCueWordClass() != null && !cueWord.getCueWordClass().isEmpty())
            {
              trainingInstance.addFeature("cueWordClassValue_" + escapedCueWordClass);
            }
          }

          if (checkForEnabledFeature("zone"))
          {
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            if (a instanceof ZoneAnnotation)
            {
              ZoneAnnotation zone = (ZoneAnnotation)a;
              final String zoneFeatureName = "zone_" + escapeFeatureName(zone.getZoneName());
              //logger.info("### zone feature: " + zoneFeatureName);
              trainingInstance.addFeature(zoneFeatureName);
            }
          }
        }
        if (scopeCount > 0)
        {
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        }
        if (scopeCount > 0)
        {
          if (checkForEnabledFeature("scopeCountNumber"))
          {
            trainingInstance.addFeature("scope_count_" + scopeCount);
          }
          if (checkForEnabledFeature("scopeCountEvenOrOdd"))
          {
            boolean scopeCountIsEven = (scopeCount % 2) == 0;
            trainingInstance.addFeature("scope_count_" + (scopeCountIsEven ? "even" : "odd"));
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            trainingInstance.addFeature("scope_count_" + scopeCount);
          }
          if (checkForEnabledFeature("scopeCountEvenOrOdd"))
          {
            boolean scopeCountIsEven = (scopeCount % 2) == 0;
            trainingInstance.addFeature("scope_count_" + (scopeCountIsEven ? "even" : "odd"));
          }
        }
      }

      //Features based on negation and speculation scopes enclosing the text of the entire training instance -Alex Yeh
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        else logger.info(String.format("WARNING: CUE %s%n  FOR SCOPE %s%n ENCLOSING %s%n is neither a negation nor speculation cue%n", cueForScope, enclosingScope,assertForTI));
      }
      if (checkForEnabledFeature("statusRuleMixNMatchFeature"))
      {
        //Write out status rule features for this instance that are meant to be mixed with non status rule features
        trainingInstance.addFeature("status_rule_mix_n_match_" + enclosingNegationScopeCnt + "negation_" + enclosingSpeculationScopeCnt + "spec_enclosing_scopes");
      }
      if (checkForEnabledFeature("statusRuleStandAloneFeature"))
      {
        //Write out status rule features for this instance that are meant to stand by themselves
        switch (enclosingNegationScopeCnt)
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