Package org.mitre.medfacts.i2b2.training

Examples of org.mitre.medfacts.i2b2.training.TrainingInstance.addFeature()

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          trainingInstance.addFeature(currentFeature);
        }
      }

      if (checkForEnabledFeature("posRightFeature")){
  trainingInstance.addFeature(FeatureUtility.constructPosRightFeatureList(conceptBeginTokenOffset, conceptEndTokenOffset, (conceptBeginLine-1), currentLine, indexer));
      }

      if (checkForEnabledFeature("posLeftFeature")){
  trainingInstance.addFeature(FeatureUtility.constructPosLeftFeatureList(conceptBeginTokenOffset, conceptEndTokenOffset, (conceptBeginLine-1), currentLine, indexer));
      }
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      if (checkForEnabledFeature("posRightFeature")){
  trainingInstance.addFeature(FeatureUtility.constructPosRightFeatureList(conceptBeginTokenOffset, conceptEndTokenOffset, (conceptBeginLine-1), currentLine, indexer));
      }

      if (checkForEnabledFeature("posLeftFeature")){
  trainingInstance.addFeature(FeatureUtility.constructPosLeftFeatureList(conceptBeginTokenOffset, conceptEndTokenOffset, (conceptBeginLine-1), currentLine, indexer));
      }

      if (checkForEnabledFeature("cueWord_DEFINITE_left_2")) {
  for (int i = 1; i < 3; i++) {
    int relPos = conceptBeginTokenOffset - i;
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  for (int i = 1; i < 3; i++) {
    int relPos = conceptBeginTokenOffset - i;
    if (relPos >= 0) {
      if (currentLine[relPos].equals("her") || currentLine[relPos].equals("his") || currentLine[relPos].equals("patient's") ||
    currentLine[relPos].equals("your") || currentLine[relPos].equals("this")) {
        trainingInstance.addFeature("cueWord_DEFINITE_left_2");
      }
    }
  }
      }
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      StringBuilder str = new StringBuilder("CWS_left");
      for (CueWordAnnotation a : annots) {
        str.append("_");
        str.append(a.getCueWordType());
      }
      trainingInstance.addFeature(str.toString());
    }
      }

      if (checkForEnabledFeature("cueWordOrderingsRight")) {
          List<CueWordAnnotation> annots = new ArrayList<CueWordAnnotation>();
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      StringBuilder str = new StringBuilder("CWS_right");
      for (CueWordAnnotation a : annots) {
              str.append("_");
              str.append(a.getCueWordType());
      }
      trainingInstance.addFeature(str.toString());
    }
      }

      //logger.info(String.format("lineNumber: %d%n", lineNumber);
      String tokensOnCurrentLine[] = textLookup[lineNumber-1];
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                String conceptType = concept.getConceptType().toString();
                int thisConceptBegin = concept.getBegin().getTokenOffset();
                int thisConceptEnd = concept.getEnd().getTokenOffset();
                if (concept.getBegin().getTokenOffset() < conceptBeginTokenOffset) {
                    trainingInstance.addFeature("concept_" + conceptType + "_left");
                    if ((conceptBeginTokenOffset - thisConceptEnd) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_left_3");
                    }
                } else {
                    if ((thisConceptBegin - conceptEndTokenOffset) < 4) {
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                int thisConceptBegin = concept.getBegin().getTokenOffset();
                int thisConceptEnd = concept.getEnd().getTokenOffset();
                if (concept.getBegin().getTokenOffset() < conceptBeginTokenOffset) {
                    trainingInstance.addFeature("concept_" + conceptType + "_left");
                    if ((conceptBeginTokenOffset - thisConceptEnd) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_left_3");
                    }
                } else {
                    if ((thisConceptBegin - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_right_3");
                    }
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                    if ((conceptBeginTokenOffset - thisConceptEnd) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_left_3");
                    }
                } else {
                    if ((thisConceptBegin - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_right_3");
                    }
                    trainingInstance.addFeature("concept_" + conceptType + "_right");
                }
            }
            }
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                    }
                } else {
                    if ((thisConceptBegin - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("concept_" + conceptType + "_right_3");
                    }
                    trainingInstance.addFeature("concept_" + conceptType + "_right");
                }
            }
            }

          if (a instanceof ScopeAnnotation)
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          {
            ScopeAnnotation scope = (ScopeAnnotation)a;
            scopeCount++;
            if (checkForEnabledFeature("scope"))
            {
              trainingInstance.addFeature("scope");
            }
            if (checkForEnabledFeature("inScope"))
            {
              trainingInstance.addFeature("in_scope_" + currentToken);
            }
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