Package org.mitre.medfacts.i2b2.training

Examples of org.mitre.medfacts.i2b2.training.TrainingInstance.addFeature()

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            {
              trainingInstance.addFeature("scope");
            }
            if (checkForEnabledFeature("inScope"))
            {
              trainingInstance.addFeature("in_scope_" + currentToken);
            }
            if (checkForEnabledFeature("inScopeId"))
            {
              trainingInstance.addFeature("in_scope_id_" + scope.getScopeId() + "_" + currentToken);
            }
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            {
              trainingInstance.addFeature("in_scope_" + currentToken);
            }
            if (checkForEnabledFeature("inScopeId"))
            {
              trainingInstance.addFeature("in_scope_id_" + scope.getScopeId() + "_" + currentToken);
            }
          }

          if (a instanceof CueAnnotation)
          {
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            if (checkForEnabledFeature("cue"))
            {
              String cueType = cue.getCueSubType().toString();
              int cueBegin = cue.getBegin().getTokenOffset();
              if (cueBegin < conceptBeginTokenOffset) {
                  trainingInstance.addFeature("cue_" + cueType + "_left");
                  if ((conceptBeginTokenOffset - cueBegin) < 4) {
                      trainingInstance.addFeature("cue_" + cueType + "_left_3");
                  }
              } else {
                  int cueEnd = cue.getEnd().getTokenOffset();
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              String cueType = cue.getCueSubType().toString();
              int cueBegin = cue.getBegin().getTokenOffset();
              if (cueBegin < conceptBeginTokenOffset) {
                  trainingInstance.addFeature("cue_" + cueType + "_left");
                  if ((conceptBeginTokenOffset - cueBegin) < 4) {
                      trainingInstance.addFeature("cue_" + cueType + "_left_3");
                  }
              } else {
                  int cueEnd = cue.getEnd().getTokenOffset();
                  trainingInstance.addFeature("cue_" + cueType + "_right");
                  if ((cueEnd - conceptEndTokenOffset) < 4) {
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                  if ((conceptBeginTokenOffset - cueBegin) < 4) {
                      trainingInstance.addFeature("cue_" + cueType + "_left_3");
                  }
              } else {
                  int cueEnd = cue.getEnd().getTokenOffset();
                  trainingInstance.addFeature("cue_" + cueType + "_right");
                  if ((cueEnd - conceptEndTokenOffset) < 4) {
                      trainingInstance.addFeature("cue_" + cueType + "_right_3");
                  }
              }
            }
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                  }
              } else {
                  int cueEnd = cue.getEnd().getTokenOffset();
                  trainingInstance.addFeature("cue_" + cueType + "_right");
                  if ((cueEnd - conceptEndTokenOffset) < 4) {
                      trainingInstance.addFeature("cue_" + cueType + "_right_3");
                  }
              }
            }
            if (checkForEnabledFeature("inCue"))
            {
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                  }
              }
            }
            if (checkForEnabledFeature("inCue"))
            {
              trainingInstance.addFeature("in_cue_" + currentToken);
            }
            if (checkForEnabledFeature("inCueForScopeId"))
            {
              trainingInstance.addFeature("in_cue_for_scope_id_" + cue.getScopeIdReference() + "_" + currentToken);
            }
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            {
              trainingInstance.addFeature("in_cue_" + currentToken);
            }
            if (checkForEnabledFeature("inCueForScopeId"))
            {
              trainingInstance.addFeature("in_cue_for_scope_id_" + cue.getScopeIdReference() + "_" + currentToken);
            }
          }

          if (a instanceof CueWordAnnotation)
          {
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            if (checkForEnabledFeature("cueWordTextPositional"))
            {
              int cueWordBegin = cueWord.getBegin().getTokenOffset();
              int cueWordEnd = cueWord.getEnd().getTokenOffset();
              if (cueWordBegin < conceptBeginTokenOffset) {
                  trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_left");
                  if ((conceptBeginTokenOffset - cueWordBegin) < 4) {
                      trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_left_3");
                  }
              } else if (cueWordBegin > conceptEndTokenOffset) {
                    trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_right");
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              int cueWordBegin = cueWord.getBegin().getTokenOffset();
              int cueWordEnd = cueWord.getEnd().getTokenOffset();
              if (cueWordBegin < conceptBeginTokenOffset) {
                  trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_left");
                  if ((conceptBeginTokenOffset - cueWordBegin) < 4) {
                      trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_left_3");
                  }
              } else if (cueWordBegin > conceptEndTokenOffset) {
                    trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_right");
                    if ((cueWordEnd - conceptEndTokenOffset) < 4) {
                        trainingInstance.addFeature("cueWordTextPositional_" + escapedCueWordText + "_right_3");
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