Examples of addToIndexes()

Examples of org.apache.ctakes.typesystem.type.refsem.MedicationDuration.addToIndexes()

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      } else if ("Duration".equals(annotation.type)) {
        String value = stringSlots.remove("duration_values");
        MedicationDuration attribute = new MedicationDuration(jCas);
        attribute.setValue(value);
        attribute.addToIndexes();
        MedicationDurationModifier modifier = new MedicationDurationModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationForm.addToIndexes()

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      } else if ("Form".equals(annotation.type)) {
        String value = stringSlots.remove("form_values");
        MedicationForm attribute = new MedicationForm(jCas);
        attribute.setValue(value);
        attribute.addToIndexes();
        MedicationFormModifier modifier = new MedicationFormModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
       
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationFrequency.addToIndexes()

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        }
        if (number != null) {
          String numberString = number.stringSlots.get("frequency_number_normalization");
          attribute.setNumber(numberString);
        }
        attribute.addToIndexes();
        MedicationFrequencyModifier modifier = new MedicationFrequencyModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationRoute.addToIndexes()

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      } else if ("Route".equals(annotation.type)) {
        String value = stringSlots.remove("route_values");
        MedicationRoute attribute = new MedicationRoute(jCas);
        attribute.setValue(value);
        attribute.addToIndexes();
        MedicationRouteModifier modifier = new MedicationRouteModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
       
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange.addToIndexes()

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      } else if ("Status change".equals(annotation.type)) {
        String value = stringSlots.remove("change_status_value");
        MedicationStatusChange attribute = new MedicationStatusChange(jCas);
        attribute.setValue(value);
        attribute.addToIndexes();
        MedicationStatusChangeModifier modifier = new MedicationStatusChangeModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationStrength.addToIndexes()

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        if (number != null) {
          KnowtatorAnnotation.Span numberSpan = number.getCoveringSpan();
          String numberString = text.substring(numberSpan.begin, numberSpan.end);
          attribute.setNumber(numberString);
        }
        attribute.addToIndexes();
        MedicationStrengthModifier modifier = new MedicationStrengthModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.OntologyConcept.addToIndexes()

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    } else {
      UmlsConcept umlsConcept = new UmlsConcept(jCas);
      umlsConcept.setCui(code);
      ontologyConcept = umlsConcept;
    }
    ontologyConcept.addToIndexes();
    entityMention.setOntologyConceptArr(new FSArray(jCas, 1));
    entityMention.setOntologyConceptArr(0, ontologyConcept);

    // add entity mention to CAS
    entityMention.addToIndexes();
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Examples of org.apache.ctakes.typesystem.type.refsem.ProcedureDevice.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("severity_class".equals(annotation.type)) {
        Severity attribute = new Severity(jCas);
        attribute.setValue(stringSlots.remove("severity_normalization"));
        attribute.addToIndexes();
        SeverityModifier modifier = new SeverityModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setTypeID(CONST.MODIFIER_TYPE_ID_SEVERITY_CLASS);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.ProcedureMethod.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("severity_class".equals(annotation.type)) {
        Severity attribute = new Severity(jCas);
        attribute.setValue(stringSlots.remove("severity_normalization"));
        attribute.addToIndexes();
        SeverityModifier modifier = new SeverityModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setTypeID(CONST.MODIFIER_TYPE_ID_SEVERITY_CLASS);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.Severity.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("severity_class".equals(annotation.type)) {
        Severity severity = new Severity(jCas);
        severity.setValue(stringSlots.remove("severity_normalization"));
        severity.addToIndexes();
        Modifier modifier = new Modifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(severity);
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("conditional_class".equals(annotation.type)) {
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