Examples of addToIndexes()

Examples of org.apache.ctakes.core.knowtator.KnowtatorAnnotation.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("severity_class".equals(annotation.type)) {
        Severity severity = new Severity(jCas);
        severity.setValue(stringSlots.remove("severity_normalization"));
        severity.addToIndexes();
        Modifier modifier = new Modifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(severity);
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("conditional_class".equals(annotation.type)) {
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Examples of org.apache.ctakes.coreference.type.DemMarkable.addToIndexes()

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    for (int i = 0; i < lc.size(); ++i) {
      Chunk c = lc.get(i);
      DemMarkable m = new DemMarkable(aJCas, c.getBegin(), c.getEnd());
      m.setContent(c);
      m.setId(nextID + i);
      m.addToIndexes();
    }

    nextID += lc.size();
  }
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Examples of org.apache.ctakes.coreference.type.MarkablePairSet.addToIndexes()

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//      }
    }
    if(tail == null) pairList.setAntecedentList(new EmptyFSList(jcas));
    else tail.setTail(new EmptyFSList(jcas));
    numVecs++;
    pairList.addToIndexes();   
  }

  private void createDemPairs(LinkedList<Annotation> lm, int p, JCas jcas) {
    DemMarkable m = (DemMarkable) lm.get(p); // Current markable under consideration
    MarkablePairSet pairList = new MarkablePairSet(jcas);
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Examples of org.apache.ctakes.coreference.type.NEMarkable.addToIndexes()

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    for (int i = 0; i < la.size(); ++i) {
      Annotation a = la.get(i);
      NEMarkable m = new NEMarkable(aJCas, a.getBegin(), a.getEnd());
      m.setContent(a);
      m.setId(nextID + i);
      m.addToIndexes();
    }

    nextID += la.size();

    ArrayList<WordToken> lw = AnnotationSelector.selectPronoun(aJCas, modalAdj, cogved, otherVerb, logger);
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Examples of org.apache.ctakes.coreference.type.PronounMarkable.addToIndexes()

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    for (int i = 0; i < lw.size(); ++i) {
      WordToken t = lw.get(i);
      PronounMarkable m = new PronounMarkable(aJCas, t.getBegin(), t.getEnd());
      m.setContent(t);
      m.setId(nextID + i);
      m.addToIndexes();
    }

    nextID += lw.size();

    ArrayList<Chunk> lc = AnnotationSelector.selectDemonAndRelative(aJCas);
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Examples of org.apache.ctakes.drugner.type.ChunkAnnotation.addToIndexes()

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        if (foundPRN)
          drugTokenAnt.setDrugChangeStatus(drugTokenAnt.getDrugChangeStatus());

        ChunkAnnotation ca = new ChunkAnnotation(jcas, begin, end);
        ca.addToIndexes();
        ca.setSentenceID(tokenAnt.getSentenceID());

        drugTokenAnt.addToIndexes();
        globalDrugNER.add(drugTokenAnt);
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Examples of org.apache.ctakes.drugner.type.DosagesAnnotation.addToIndexes()

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        begSegDose = mt.getStartOffset();
        endSegDose = mt.getEndOffset();
        DosagesAnnotation ma = new DosagesAnnotation(jcas, begSegDose,
            endSegDose);

        ma.addToIndexes();

      }
      Set suffixTokenSet = iv_suffixFSM.execute(baseTokenList, strengthTokenSet);

      Iterator suffixTokenItr = suffixTokenSet.iterator();
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Examples of org.apache.ctakes.drugner.type.DrugMentionAnnotation.addToIndexes()

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        ChunkAnnotation ca = new ChunkAnnotation(jcas, begin, end);
        ca.addToIndexes();
        ca.setSentenceID(tokenAnt.getSentenceID());

        drugTokenAnt.addToIndexes();
        globalDrugNER.add(drugTokenAnt);

      }

      if (isDrugNER)
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Examples of org.apache.ctakes.drugner.type.DurationAnnotation.addToIndexes()

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        DurationToken du = (DurationToken) durationTokenItr.next();
        begSegDU = du.getStartOffset();
        endSegDU = du.getEndOffset();
        DurationAnnotation ma = new DurationAnnotation(jcas, begSegDU, endSegDU);
        // dm.setDurationElement(jcas, begSegDU, endSegDU);
        ma.addToIndexes();
        // loadandAppend("./frequencyTable.csv", ma.getCoveredText(),
        // true);
      }

    } catch (Exception e)
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Examples of org.apache.ctakes.drugner.type.FormAnnotation.addToIndexes()

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      while (formTokenItr.hasNext())
      {
        FormToken mt = (FormToken) formTokenItr.next();
        FormAnnotation ma = new FormAnnotation(jcas, mt.getStartOffset(), mt.getEndOffset());

        ma.addToIndexes();
        // if (defaultNE != null && defaultNE.getCoveredText() != null)
        // defaultNE.setForm(ma.getCoveredText());

      }
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