Examples of addToIndexes()

Examples of org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue.addToIndexes()

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        // add final classification as a new NominalAttributeValue object
        NominalAttributeValue finalNav = new NominalAttributeValue(jcas);
        finalNav.setAttributeName(navName);
        finalNav.setNominalValue(finalClassification);
        finalNav.addToIndexes();
    }
   
  private Set<String> readLinesFromFile(String fileName) throws IOException
  {
    Set<String> returnValues = new HashSet<String>();
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Examples of org.apache.ctakes.typesystem.type.refsem.BodyLaterality.addToIndexes()

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            !value.equals(CONST.ATTR_BODYLATERALITY_PROXIMAL) &&
            !value.equals(CONST.ATTR_BODYLATERALITY_UNMARKED)) {
          throw new UnsupportedOperationException("Invalid BodyLaterality: " + value);
        }
        attribute.setValue(value);
        attribute.addToIndexes();
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("superior_or_inferior".equals(annotation.type)) {
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Examples of org.apache.ctakes.typesystem.type.refsem.BodySide.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("body_side_class".equals(annotation.type)) {
        BodySide bodySide = new BodySide(jCas);
        bodySide.setValue(stringSlots.remove("body_side_normalization"));
        bodySide.addToIndexes();
        Modifier modifier = new Modifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(bodySide);
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("negation_indicator_class".equals(annotation.type)) {
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Examples of org.apache.ctakes.typesystem.type.refsem.Course.addToIndexes()

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        idAnnotationMap.put(annotation.id, modifier);

      } else if ("course_class".equals(annotation.type)) {
        Course course = new Course(jCas);
        course.setValue(stringSlots.remove("course_normalization"));
        course.addToIndexes();
        Modifier modifier = new Modifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(course);
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("uncertainty_indicator_class".equals(annotation.type)) {
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Examples of org.apache.ctakes.typesystem.type.refsem.Date.addToIndexes()

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        String month = stringSlots.remove("month");
        String day = stringSlots.remove("day");
        Date date = new Date(jCas);
        date.setMonth(month);
        date.setDay(day);
        date.addToIndexes();
        TimeMention mention = new TimeMention(jCas, coveringSpan.begin, coveringSpan.end);
        mention.setDate(date);
        mention.addToIndexes();
        idAnnotationMap.put(annotation.id, mention);
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Examples of org.apache.ctakes.typesystem.type.refsem.Event.addToIndexes()

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        event.setMentions(0, eventMention);
        eventMention.setEvent(event);

        // add the annotations to the indexes
        eventProperties.addToIndexes();
        event.addToIndexes();
        eventMention.addToIndexes();
        idAnnotationMap.put(annotation.id, eventMention);

      } else if ("DOCTIME".equals(annotation.type)) {
        // TODO
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Examples of org.apache.ctakes.typesystem.type.refsem.EventProperties.addToIndexes()

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        event.setMentions(new FSArray(jCas, 1));
        event.setMentions(0, eventMention);
        eventMention.setEvent(event);

        // add the annotations to the indexes
        eventProperties.addToIndexes();
        event.addToIndexes();
        eventMention.addToIndexes();
        idAnnotationMap.put(annotation.id, eventMention);

      } else if ("DOCTIME".equals(annotation.type)) {
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Examples of org.apache.ctakes.typesystem.type.refsem.LabReferenceRange.addToIndexes()

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      } else if ("reference_range".equals(annotation.type)) {
        LabReferenceRangeModifier modifier = new LabReferenceRangeModifier(jCas, coveringSpan.begin, coveringSpan.end);
        LabReferenceRange attribute = new LabReferenceRange(jCas);
        attribute.setValue(modifier.getCoveredText());
        attribute.addToIndexes();
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);

      } else if ("Value".equals(annotation.type)) {
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Examples of org.apache.ctakes.typesystem.type.refsem.LabValue.addToIndexes()

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        if (number != null) {
          KnowtatorAnnotation.Span numberSpan = number.getCoveringSpan();
          String numberString = text.substring(numberSpan.begin, numberSpan.end);
          attribute.setNumber(numberString);
        }
        attribute.addToIndexes();
        LabValueModifier modifier = new LabValueModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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Examples of org.apache.ctakes.typesystem.type.refsem.MedicationDosage.addToIndexes()

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      } else if ("Dosage".equals(annotation.type)) {
        String value = stringSlots.remove("dosage_values");
        MedicationDosage attribute = new MedicationDosage(jCas);
        attribute.setValue(value);
        attribute.addToIndexes();
        MedicationDosageModifier modifier = new MedicationDosageModifier(jCas, coveringSpan.begin, coveringSpan.end);
        modifier.setNormalizedForm(attribute);
        modifier.addToIndexes();
        idAnnotationMap.put(annotation.id, modifier);
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