Examples of sort()

Examples of fork.lib.bio.anno.genomic.region.GenomicRegionsMerger.sort()

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        if(FileName.getExt(f).equals("bed") && !f.getName().equals(out.getName()) ){
            System.out.println(f);
            GenomicRegionsBuilder gb= new BedReader(f).getGenomicRegionsBuilder();
            mer.mergeNoSort(gb);
        }
        mer.sort();
    }
   
    GenomicRegionsBuilder gbout= mer.getMergedGenomicRegionsBuilder();
    new BedExporter(gbout).writeToFile(out);
   
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Examples of gnu.trove.list.TIntList.sort()

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        TIntList built = foreach.getBuilt();
        TIntList keys_list = new TIntArrayList( map.keys( new int[map.size()] ) );
        assertEquals( keys_list, built );

        built.sort();
        keys_list.sort();
        assertEquals( keys_list, built );


        class ForEachFalse implements TIntProcedure {
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Examples of gnu.trove.list.TLongList.sort()

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        assertFalse( "collections should not be equal: " + values + ", " + values_list,
                values.equals( values_list ) );

        TLongList list = new TLongArrayList( vals );
        values_list.sort();
        list.sort();
        assertTrue( "collections incorrectly not equal: " + values_list + ", " + list,
                values_list.equals( list ) );
        assertTrue( "collections incorrectly not equal: " + values_list + ", " + list,
                values_list.equals( list ) );
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Examples of gnu.trove.list.array.TIntArrayList.sort()

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        TIntList built = foreach.getBuilt();
        TIntList keys_list = new TIntArrayList( map.keys( new int[map.size()] ) );
        assertEquals( keys_list, built );

        built.sort();
        keys_list.sort();
        assertEquals( keys_list, built );


        class ForEachFalse implements TIntProcedure {
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Examples of gnu.trove.list.array.TLongArrayList.sort()

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        assertFalse( "collections should not be equal: " + values + ", " + values_list,
                values.equals( values_list ) );

        TLongList list = new TLongArrayList( vals );
        values_list.sort();
        list.sort();
        assertTrue( "collections incorrectly not equal: " + values_list + ", " + list,
                values_list.equals( list ) );
        assertTrue( "collections incorrectly not equal: " + values_list + ", " + list,
                values_list.equals( list ) );
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Examples of htsjdk.samtools.util.IntervalList.sort()

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                    LOG.info(partial);
                }
            }
        }

        toIntervals.sort();
        toIntervals.write(OUTPUT);
        return anyFailed? 1: 0;
    }
}
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Examples of infovis.utils.Permutation.sort()

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                    tree.getColumn(value));
            }
            final Column order = visualization.getVisualColumn("sort");
            final Column size = visualization.getVisualColumn(Visualization.VISUAL_SIZE);
            Permutation perm = visualization.getPermutation();
            perm.sort(new RowComparator() {
                public int compare(int row1, int row2) {
                    if (tree.isLeaf(row1) && tree.isLeaf(row2)) {
                        return size.compare(row1, row2);
                    }
                    else {
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Examples of junit.framework.JUnit4TestAdapter.sort()

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  }

  public void sort(Sorter sorter) {
    if (fTest instanceof JUnit4TestAdapter) {
      JUnit4TestAdapter adapter= (JUnit4TestAdapter) fTest;
      adapter.sort(sorter);
    }
  }
}
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Examples of kalashnikov.dmitry.lab3.Dispatcher.sort()

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*/
public class DispatcherTest {
    @Test
    public void testDispatcherNormal2Threads() throws InterruptedException, ExecutionException, IOException {
        Dispatcher dispatcher = new Dispatcher("multicoreTest.txt", 2);
        Assert.assertArrayEquals(new int[]{1, 2, 2, 3, 5, 5, 6, 8, 9, 34}, dispatcher.sort());
        dispatcher = new Dispatcher("multicoreTest_1_by_1.txt", 2);
        Assert.assertArrayEquals(new int[]{1, 2, 2, 3, 5, 5, 6, 8, 9, 34}, dispatcher.sort());
    }

    @Test
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Examples of lupos.datastructures.dbmergesortedds.DBMergeSortedSetUsingTrie.sort()

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                return rdftermsRepresentations.size();
              }

            };

            rdftermsRepresentations.sort();

            final Thread thread0 = new Thread() {
              @Override
              public void run() {
                lupos.datastructures.paged_dbbptree.DBBPTree<String, Integer> simap;
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