Examples of DicomInputStream

org.dcm4che3.io.DicomInputStream
@author Gunter Zeilinger

Examples of org.dcm4che3.io.DicomInputStream


    private void readObject(ObjectInputStream in)
            throws IOException, ClassNotFoundException {
        in.defaultReadObject();
        init(in.readInt());
        @SuppressWarnings("resource")
        DicomInputStream din = new DicomInputStream(in, 
                bigEndian ? UID.ExplicitVRBigEndianRetired
                          : UID.ExplicitVRLittleEndian);
        din.readAttributes(this, -1, Tag.ItemDelimitationItem);
    }

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Examples of org.dcm4che3.io.DicomInputStream


    @Override
    protected DataWriter createDataWriter(InstanceLocator inst, String tsuid)
            throws IOException {
        Attributes attrs;
        DicomInputStream in = new DicomInputStream(inst.getFile());
        try {
            if (withoutBulkData) {
                in.setIncludeBulkData(IncludeBulkData.NO);
                attrs = in.readDataset(-1, Tag.PixelData);
            } else {
                in.setIncludeBulkData(IncludeBulkData.URI);
                attrs = in.readDataset(-1, -1);
            }
        } finally {
            SafeClose.close(in);
        }
        return new DataWriterAdapter(attrs);

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Examples of org.dcm4che3.io.DicomInputStream

            throws Exception {
        return inst.tsuid;
    }


    protected DataWriter createDataWriter(T inst, String tsuid) throws Exception {
        DicomInputStream in = new DicomInputStream(inst.getFile());
        in.readFileMetaInformation();
        return new InputStreamDataWriter(in);
    }

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Examples of org.dcm4che3.io.DicomInputStream

        if (!file.exists())
            throw new DicomServiceException(Status.NoSuchObjectInstance).
                setUID(Tag.AffectedSOPInstanceUID, iuid);
        LOG.info("{}: M-UPDATE {}", as, file);
        Attributes data;
        DicomInputStream in = null;
        try {
            in = new DicomInputStream(file);
            data = in.readDataset(-1, -1);
        } catch (IOException e) {
            LOG.warn(as + ": Failed to read MPPS:", e);
            throw new DicomServiceException(Status.ProcessingFailure, e);
        } finally {
            SafeClose.close(in);

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Examples of org.dcm4che3.io.DicomInputStream

            throw new AAbort();
        }
    }


    private Attributes readCommand() throws IOException {
        DicomInputStream in =
                new DicomInputStream(this, UID.ImplicitVRLittleEndian);
        try {
            return in.readCommand();
        } finally {
            SafeClose.close(in);
        }
    }

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Examples of org.dcm4che3.io.DicomInputStream

        }
    }


    @Override
    public Attributes readDataset(String tsuid) throws IOException {
        DicomInputStream in = new DicomInputStream(this, tsuid);
        try {
            return in.readDataset(-1, -1);
        } finally {
            SafeClose.close(in);
        }
    }

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Examples of org.dcm4che3.io.DicomInputStream

        }
        String pid;
        String styuid;
        String seruid;
        String iuid;
        DicomInputStream din = null;
        try {
            din = new DicomInputStream(f);
            din.setIncludeBulkData(IncludeBulkData.NO);
            Attributes fmi = din.readFileMetaInformation();
            Attributes dataset = din.readDataset(-1, Tag.StudyID);
            iuid = (fmi != null)
                ? fmi.getString(Tag.MediaStorageSOPInstanceUID, null)
                : dataset.getString(Tag.SOPInstanceUID, null);
            if (iuid == null) {
                System.out.println();
                System.out.println(MessageFormat.format(
                        rb.getString("skip-file"), f));
                return 0;
            }
            pid = dataset.getString(Tag.PatientID, null);
            styuid = dataset.getString(Tag.StudyInstanceUID, null);
            seruid = dataset.getString(Tag.SeriesInstanceUID, null);
        } catch (IOException e) {
            System.out.println();
            System.out.println(
                    MessageFormat.format(rb.getString("failed-to-parse"),
                            f, e.getMessage()));
            return 0;
        } finally {
            if (din != null)
                try { din.close(); } catch (Exception ignore) {}
        }
        Attributes instRec;
        if (styuid != null && seruid != null) {
            Attributes patRec =
                in.findPatientRecord(pid == null ? styuid : pid);

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Examples of org.dcm4che3.io.DicomInputStream

     }


     public void transcode(File src, File dest) throws IOException {
        Attributes fmi;
        Attributes dataset;
        DicomInputStream dis = new DicomInputStream(src);
        try {
            dis.setIncludeBulkData(IncludeBulkData.URI);
            fmi = dis.readFileMetaInformation();
            dataset = dis.readDataset(-1, -1);
        } finally {
            dis.close();
        }
        Object pixeldata = dataset.getValue(Tag.PixelData);
        Compressor compressor = null;
        DicomOutputStream dos = null;
        try {
            String tsuid = this.tsuid;
            if (pixeldata != null) {
                if (tstype.isPixeldataEncapsulated()) {
                    tsuid = adjustTransferSyntax(tsuid,
                            dataset.getInt(Tag.BitsStored, 8));
                    compressor = new Compressor(dataset, dis.getTransferSyntax());
                    compressor.compress(tsuid,
                            params.toArray(new Property[params.size()]));
                } else if (pixeldata instanceof Fragments)
                    Decompressor.decompress(dataset, dis.getTransferSyntax());
            }
            if (nofmi)
                fmi = null;
            else if (retainfmi && fmi != null)
                fmi.setString(Tag.TransferSyntaxUID, VR.UI, tsuid);

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Examples of org.dcm4che3.io.DicomInputStream

                            rb.getString("illegal-width"), s));
                }
            }
            String fname = fname(cl.getArgList());
            if (fname.equals("-")) {
                main.parse(new DicomInputStream(System.in));
            } else {
                DicomInputStream dis =
                        new DicomInputStream(new File(fname));
                try {
                    main.parse(dis);
                } finally {
                    dis.close();
                }
            }
        } catch (ParseException e) {
            System.err.println("dcmdump: " + e.getMessage());
            System.err.println(rb.getString("try"));

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Examples of org.dcm4che3.io.DicomInputStream

            main.setIncludeNamespaceDeclaration(cl.hasOption("xmlns")); if (cl.hasOption("xml11"))
                main.setXMLVersion(XML_1_1);
            configureBulkdata(main, cl);
            String fname = fname(cl.getArgList());
            if (fname.equals("-")) {
                main.parse(new DicomInputStream(System.in));
            } else {
                DicomInputStream dis =
                        new DicomInputStream(new File(fname));
                try {
                    main.parse(dis);
                } finally {
                    dis.close();
                }
            }
        } catch (ParseException e) {
            System.err.println("dcm2xml: " + e.getMessage());
            System.err.println(rb.getString("try"));

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