6566676869707172737475
System.out.println(rz.gr.toUCSCFormat()+" "+ vz+" "+ vs); gbout.add(rz.gr); } } gbout.join(0); gbout.writeToFileBed(new File("out/swr1_z.bed")); }
4546474849505152535455
} }else{ gbout.addAll(chr, rs); } } gbout.writeToFileBed(out); }
9899100101102103104105106107108
} gbout.writeToFileBed(new File(od+"/orient3.bed")); }
6061626364656667686970
gbout.add((GenomicRegion)r); } } gbout.writeToFileBed(out); }
4950515253545556575859
} GenomicRegion gr= grf.clone(); gr.setValue(lfc); gbout.add(gr); } gbout.writeToFileBed(out); } public static void main(String[] args) throws Exception { //debug File dir= Dirs.getFile("dir");