Examples of totalArea()

Examples of fork.lib.bio.anno.genomic.LandscapeBuilder.totalArea()

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public static void removeShortAndNorm(File outSub, File outNorm)throws Exception {
    LandscapeBuilder lb= new BedGraphReader(outSub).getLandscapeBuilder();
    LandscapeTransformer lt= new LandscapeTransformer(lb);
    lt.selectLength(300, Integer.MAX_VALUE);
    double sum= lb.totalArea();
    double fac= sum/Math.pow(10, 8);
    lt.divideBy( fac );
    new BedGraphExporter(lb).writeToFile(outNorm);
}
   
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Examples of fork.lib.bio.anno.genomic.LandscapeBuilder.totalArea()

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public void removeShort()throws Exception {
    LandscapeBuilder lb= new BedGraphReader(outSub2).getLandscapeBuilder();
    LandscapeTransformer lt= new LandscapeTransformer(lb);
    lt.selectLength(150, Integer.MAX_VALUE);
    double sum= lb.totalArea();
    double fac= sum/Math.pow(10, 8);
    lt.divideBy( fac );
    new BedGraphExporter(lb).writeToFile(out);
}
   
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