List of safeDelCostX() Examples

Examples of safeDelCostX()

bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostX()
@param ix @return

Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostX()

            nextGroupIx);
      }
      return nextGroupIx;
    }


    double pruneAll = -matcher.safeDelCostX(tFromNeighborIx);
    // -t.weights[tTo][tFromNeighborIx];
    for (int u = 0; u < t.outAdjLists[tTo].length; ++u) {
      pruneAll += matcher.safeDelCostX(u);
      // t.weights[tTo][u];
    }

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Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostX()

    }


    double pruneAll = -matcher.safeDelCostX(tFromNeighborIx);
    // -t.weights[tTo][tFromNeighborIx];
    for (int u = 0; u < t.outAdjLists[tTo].length; ++u) {
      pruneAll += matcher.safeDelCostX(u);
      // t.weights[tTo][u];
    }


    double initWeight = pruneAll + t.smoothCost[tTo];

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Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostX()


    for (int u = 0; u < t.outAdjLists[tTo].length; ++u) {
      if (u != tFromNeighborIx) {
        if (MathOperations.equals(cost, initWeight
            + matchers[tTo][sFrom].getMatchCostXY(u, sToNeighborIx)
            - matcher.safeDelCostX(u))) { // t.weights[tTo][u])) {
          if (t.outDeg(tTo) != 2) {
            ++nextGroupIx;
          }
          nextGroupIx = traceback(t, s, alignment, tTo, u, sFrom,
              sToNeighborIx, nextGroupIx);

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