// DEBUG
//sourceTree.acceptVisitor( new TreeDumpVisitor( new File( "tree.txt" ) ), null );
// resolve all the classes in the source references
for( Token token : index.referenceTokens() )
{
EntryReference<Entry,Entry> deobfReference = index.getDeobfReference( token );
// get the obfuscated entry
Entry obfEntry = obfuscateEntry( deobfReference.entry );