Examples of readContainerHeader()

Examples of net.sf.cram.structure.ContainerHeaderIO.readContainerHeader()

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  public static Container readContainerHeader(InputStream is)
      throws IOException {
    Container c = new Container();
    ContainerHeaderIO chio = new ContainerHeaderIO();
    if (!chio.readContainerHeader(c, is)) return null ;
    return c;
  }

  public static Container readContainer(SAMFileHeader samFileHeader,
      InputStream is, int fromSlice, int howManySlices)
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Examples of net.sf.cram.structure.ContainerHeaderIO.readContainerHeader()

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    assertEquals(2, cramHeader.majorVersion);
    assertEquals(0, cramHeader.minorVersion);

    Container container = new Container();
    ContainerHeaderIO chio = new ContainerHeaderIO();
    chio.readContainerHeader(container, stream);
    assertNotNull(container);
    System.out.println(container);

    CompressionHeaderBLock chb = new CompressionHeaderBLock(stream);
    container.h = chb.getCompressionHeader();
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Examples of net.sf.cram.structure.ContainerHeaderIO.readContainerHeader()

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    assertNotNull(cramHeader.samFileHeader);
    assertEquals(2, cramHeader.majorVersion);
    assertEquals(0, cramHeader.minorVersion);

    Container container3 = new Container();
    chio.readContainerHeader(container3, bais);
    assertNotNull(container3);
    System.out.println(container3);

    CompressionHeaderBLock chb3 = new CompressionHeaderBLock(bais);
    container3.h = chb3.getCompressionHeader();
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