Examples of org.sbml.jsbml.CVTerm.addResource()

org.sbml.jsbml.CVTerm.addResource()
Adds a resource to the {@link CVTerm}.
Same method a {@link #addResourceURI(String)} @param urn string representing the resource; e.g., 'urn:miriam:kegg.reaction:R00351' @return {@code true} as specified in {@link Collection#add(Object)}

    Model m = doc.createModel("model");


    CVTerm term = new CVTerm();
    term.setQualifierType(Type.MODEL_QUALIFIER);
    term.setModelQualifierType(Qualifier.BQM_IS);
    term.addResource("urn:miriam:kegg.pathway:hsa00010");
    m.addCVTerm(term);


    History history = new History();
    Creator creator = new Creator();
    creator.setFamilyName("Dr\u00e4ger");

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      Species s1 = m.createSpecies("id1");
      
      Annotation annotation = new Annotation();
      CVTerm cvterm = new CVTerm();
      cvterm.addResource("urn.miriam.obo.go#GO%3A1234567");
      cvterm.setQualifierType(Type.BIOLOGICAL_QUALIFIER);
      cvterm.setBiologicalQualifierType(Qualifier.BQB_IS);
      
      annotation.addCVTerm(cvterm);

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      CVTerm cvTerm = new CVTerm(Qualifier.BQB_IS);
      cvTerm.setQualifierType(Type.BIOLOGICAL_QUALIFIER);
      
      if(urn_id.startsWith("C"))
      {
      cvTerm.addResource("urn:miriam:kegg.compound:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?cpd:"+urn_id);
      }
      
      if(urn_id.startsWith("G"))

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      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?cpd:"+urn_id);
      }
      
      if(urn_id.startsWith("G"))
      {
      cvTerm.addResource("urn:miriam:kegg.glycan:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("<myApp:xxx>http://www.genome.jp/dbget-bin/www_bget?gl:"+urn_id + "</myApp:xxx>");
      }
      
      if (urn_id.contains("."))

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      annotation.appendNoRDFAnnotation("<myApp:xxx>http://www.genome.jp/dbget-bin/www_bget?gl:"+urn_id + "</myApp:xxx>");
      }
      
      if (urn_id.contains("."))
      {
      cvTerm.addResource("urn:miriam:ec-code:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?ec:"+urn_id);
      }


      System.out.println("The Annotation is still empty as there is no metaid defined on the species !!");

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    Model m = doc.createModel("model");


    CVTerm term = new CVTerm();
    term.setQualifierType(Type.MODEL_QUALIFIER);
    term.setModelQualifierType(Qualifier.BQM_IS);
    term.addResource("urn:miriam:kegg.pathway:hsa00010");
    m.addCVTerm(term);


    History history = new History();
    Creator creator = new Creator();
    creator.setFamilyName("Dr\u00e4ger");

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      Species s1 = m.createSpecies("id1");
      
      Annotation annotation = new Annotation();
      CVTerm cvterm = new CVTerm();
      cvterm.addResource("urn.miriam.obo.go#GO%3A1234567");
      cvterm.setQualifierType(Type.BIOLOGICAL_QUALIFIER);
      cvterm.setBiologicalQualifierType(Qualifier.BQB_IS);
      
      annotation.addCVTerm(cvterm);

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      CVTerm cvTerm = new CVTerm(Qualifier.BQB_IS);
      cvTerm.setQualifierType(Type.BIOLOGICAL_QUALIFIER);
      
      if(urn_id.startsWith("C"))
      {
      cvTerm.addResource("urn:miriam:kegg.compound:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?cpd:"+urn_id);
      }
      
      if(urn_id.startsWith("G"))

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      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?cpd:"+urn_id);
      }
      
      if(urn_id.startsWith("G"))
      {
      cvTerm.addResource("urn:miriam:kegg.glycan:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("<myApp:xxx>http://www.genome.jp/dbget-bin/www_bget?gl:"+urn_id + "</myApp:xxx>");
      }
      
      if (urn_id.contains("."))

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      annotation.appendNoRDFAnnotation("<myApp:xxx>http://www.genome.jp/dbget-bin/www_bget?gl:"+urn_id + "</myApp:xxx>");
      }
      
      if (urn_id.contains("."))
      {
      cvTerm.addResource("urn:miriam:ec-code:" + urn_id);
      annotation.addCVTerm(cvTerm);
      annotation.appendNoRDFAnnotation("http://www.genome.jp/dbget-bin/www_bget?ec:"+urn_id);
      }


      System.out.println("The Annotation is still empty as there is no metaid defined on the species !!");

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