Package org.broadinstitute.gatk.utils.pileup

Examples of org.broadinstitute.gatk.utils.pileup.ReadBackedPileup.depthOfCoverage()

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        li = makeLTBS(reads,readAttributes);

        while (li.hasNext()) {
            AlignmentContext context = li.next();
            ReadBackedPileup pileup = context.getBasePileup();
            Assert.assertEquals(pileup.depthOfCoverage(), 4);
        }
    }

    @Test(enabled = true && ! DEBUG)
    public void testIndelsInRegularPileup() {
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