Package org.apache.uima.jcas.cas

Examples of org.apache.uima.jcas.cas.TOP.addToIndexes()

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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        fillFeatures(newStructure, features, matchedAnnotation, element, stream);
        newStructure.addToIndexes();
      }
    }
  }

  // TODO refactor duplicate methods -> MarkAction
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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        gatherFeatures(newStructure, features, matchedAnnotation, element, match, stream);
        newStructure.addToIndexes();
      }
    }

  }
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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        fillFeatures(newStructure, map, annotationFS, element, rowWhere, stream);
        newStructure.addToIndexes();
      }
    }
  }

  private void fillFeatures(TOP structure, Map<String, Integer> map, AnnotationFS annotationFS,
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        for (TOP annotation : JCasUtil.select(goldView, annotationClass)) {
          TOP copy = (TOP) copier.copyFs(annotation);
          if (copy instanceof Annotation) {
            copy.setFeatureValue(sofaFeature, systemView.getSofa());
          }
          copy.addToIndexes(systemView);
        }
      }
    }
  }
 
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          Object val = getterMeth.invoke(srcObj, (Object[]) null);
          Object[] setterArgs = { val };
          setterMeth.invoke(destObj, setterArgs);
        }
        // add new destination object to JCas
        destObj.addToIndexes();
      } catch (Exception e) {
        throw new AnalysisEngineProcessException(e);
      }
    }
  }
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          setterMeth.invoke(destObj, setterArgs);
         
        }
        // add new destination object to JCas
        if (okayToSkip) {
          destObj.addToIndexes();
        } else {
          Iterator lookupWindows = FSUtil.getAnnotationsInSpanIterator(jcas, org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation.type, segment.getBegin(), segment.getEnd());
          while (lookupWindows.hasNext()){
            org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation lookup = (org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation) lookupWindows.next();
            org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation drugLookup = new org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation(jcas, lookup.getBegin(), lookup.getEnd()); //Reorganized paths in 3.0 SPM
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          Object val = getterMeth.invoke(srcObj, (Object[]) null);
          Object[] setterArgs = { val };
          setterMeth.invoke(destObj, setterArgs);
        }
        // add new destination object to JCas
        destObj.addToIndexes();
      } catch (Exception e) {
        throw new AnalysisEngineProcessException(e);
      }
    }
  }
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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        gatherFeatures(newStructure, features, matchedAnnotation, element, match, stream);
        newStructure.addToIndexes();
      }
    }

  }
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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        fillFeatures(newStructure, features, matchedAnnotation, element, stream);
        newStructure.addToIndexes();
      }
    }
  }

  // TODO refactor duplicate methods -> MarkAction
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      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
        fillFeatures(newStructure, map, annotationFS, element, rowWhere, stream);
        newStructure.addToIndexes();
      }
    }
  }

  private void fillFeatures(TOP structure, Map<String, Integer> map, AnnotationFS annotationFS,
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TOP
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