Package org.apache.airavata.gfac.context

Examples of org.apache.airavata.gfac.context.MessageContext.addParameter()

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        MessageContext om1 = new MessageContext();

        // TODO: Aint the output parameters are only the name of the files staged out to the gridftp endpoint?
        ActualParameter o1 = new ActualParameter();
        ((StringParameterType) o1.getType()).setValue("tempfile");
        om1.addParameter("o1", o1);

        ActualParameter o2 = new ActualParameter();
        o2.getType().changeType(URIParameterType.type);

        ((URIParameterType) o2.getType()).setValue("http://path/to/upload");
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        ActualParameter o2 = new ActualParameter();
        o2.getType().changeType(URIParameterType.type);

        ((URIParameterType) o2.getType()).setValue("http://path/to/upload");
        om1.addParameter("o2", o2);

        return om1;
    }

    private GSISecurityContext getSecurityContext() {
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        MessageContext inMessage = new MessageContext();

        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("ai");
        inMessage.addParameter("molecule_id", echo_input);

        ActualParameter geom_mol2 = new ActualParameter(URIParameterType.type);
        ((URIParameterType) geom_mol2.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/ai.mol2");
        inMessage.addParameter("geom_mol2", geom_mol2);
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        ((StringParameterType) echo_input.getType()).setValue("ai");
        inMessage.addParameter("molecule_id", echo_input);

        ActualParameter geom_mol2 = new ActualParameter(URIParameterType.type);
        ((URIParameterType) geom_mol2.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/ai.mol2");
        inMessage.addParameter("geom_mol2", geom_mol2);

        ActualParameter toppar_main_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_main_tgz.getType()).setValue("/home/gridchem/workflow_script/toppar/cgenff/releases/2b7/main.tgz");
        inMessage.addParameter("toppar_main_tgz", toppar_main_tgz);
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        ((URIParameterType) geom_mol2.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/ai.mol2");
        inMessage.addParameter("geom_mol2", geom_mol2);

        ActualParameter toppar_main_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_main_tgz.getType()).setValue("/home/gridchem/workflow_script/toppar/cgenff/releases/2b7/main.tgz");
        inMessage.addParameter("toppar_main_tgz", toppar_main_tgz);

        ActualParameter toppar_usr_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_usr_tgz.getType()).setValue("gsiftp://trestles.sdsc.edu");
        inMessage.addParameter("toppar_usr_tgz", toppar_usr_tgz);
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        ((URIParameterType) toppar_main_tgz.getType()).setValue("/home/gridchem/workflow_script/toppar/cgenff/releases/2b7/main.tgz");
        inMessage.addParameter("toppar_main_tgz", toppar_main_tgz);

        ActualParameter toppar_usr_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_usr_tgz.getType()).setValue("gsiftp://trestles.sdsc.edu");
        inMessage.addParameter("toppar_usr_tgz", toppar_usr_tgz);

        ActualParameter toppar_mol_str = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_mol_str.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/toppar/ai.str");
        inMessage.addParameter("toppar_mol_str", toppar_mol_str);
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        ((URIParameterType) toppar_usr_tgz.getType()).setValue("gsiftp://trestles.sdsc.edu");
        inMessage.addParameter("toppar_usr_tgz", toppar_usr_tgz);

        ActualParameter toppar_mol_str = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_mol_str.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/toppar/ai.str");
        inMessage.addParameter("toppar_mol_str", toppar_mol_str);

        ActualParameter molecule_dir_in_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) molecule_dir_in_tgz.getType()).setValue("");
        inMessage.addParameter("molecule_dir_in_tgz", molecule_dir_in_tgz);
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        ((URIParameterType) toppar_mol_str.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/toppar/ai.str");
        inMessage.addParameter("toppar_mol_str", toppar_mol_str);

        ActualParameter molecule_dir_in_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) molecule_dir_in_tgz.getType()).setValue("");
        inMessage.addParameter("molecule_dir_in_tgz", molecule_dir_in_tgz);

        ActualParameter GC_UserName = new ActualParameter();
        ((StringParameterType) GC_UserName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_UserName", GC_UserName);
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        ((URIParameterType) molecule_dir_in_tgz.getType()).setValue("");
        inMessage.addParameter("molecule_dir_in_tgz", molecule_dir_in_tgz);

        ActualParameter GC_UserName = new ActualParameter();
        ((StringParameterType) GC_UserName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_UserName", GC_UserName);

        ActualParameter GC_ProjectName = new ActualParameter();
        ((StringParameterType) GC_ProjectName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_ProjectName", GC_ProjectName);
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        ((StringParameterType) GC_UserName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_UserName", GC_UserName);

        ActualParameter GC_ProjectName = new ActualParameter();
        ((StringParameterType) GC_ProjectName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_ProjectName", GC_ProjectName);

        ActualParameter GC_WorkflowName = new ActualParameter();
        ((StringParameterType) GC_WorkflowName.getType()).setValue("ai__1339258840");
        inMessage.addParameter("GC_WorkflowName", GC_WorkflowName);
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