Examples of formatLong()

Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                            + sdf.formatPercentage(getPercentSingletons()));
             }

        globals.addRow("Read min/max/mean length",
                sdf.formatLong(readMinSize) + " / "
                        + sdf.formatLong(readMaxSize) + " / "
                        + sdf.formatDecimal(readMeanSize));

        if (numSelectedRegions == 0) {

            globals.addRow("Clipped reads",
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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        summaryStatsKeeper.addSection(globals);

        if (numSelectedRegions > 0) {
            StatsKeeper.Section globalsInRegions = new StatsKeeper.Section("Globals" + postfix);
            globalsInRegions.addRow("Regions size/percentage of reference",
                    sdf.formatLong((numBasesInsideRegions))
                            + " / " + sdf.formatPercentage(getSelectedRegionsPercentage()));


            globalsInRegions.addRow("Mapped reads",
                    sdf.formatLong(numMappedReadsInRegions)
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                    sdf.formatLong((numBasesInsideRegions))
                            + " / " + sdf.formatPercentage(getSelectedRegionsPercentage()));


            globalsInRegions.addRow("Mapped reads",
                    sdf.formatLong(numMappedReadsInRegions)
                            + "  /  " + sdf.formatPercentage(percentageMappedReadsInRegions));
            if (numPairedReads > 0) {
                globalsInRegions.addRow("Mapped reads, only first in pair",
                        sdf.formatLong(numMappedFirstOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedFirstOfPairInRegions));
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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            globalsInRegions.addRow("Mapped reads",
                    sdf.formatLong(numMappedReadsInRegions)
                            + "  /  " + sdf.formatPercentage(percentageMappedReadsInRegions));
            if (numPairedReads > 0) {
                globalsInRegions.addRow("Mapped reads, only first in pair",
                        sdf.formatLong(numMappedFirstOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedFirstOfPairInRegions));

                globalsInRegions.addRow("Mapped reads, only second in pair",
                        sdf.formatLong(numMappedSecondOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedSecondOfPairInRegions));
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                globalsInRegions.addRow("Mapped reads, only first in pair",
                        sdf.formatLong(numMappedFirstOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedFirstOfPairInRegions));

                globalsInRegions.addRow("Mapped reads, only second in pair",
                        sdf.formatLong(numMappedSecondOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedSecondOfPairInRegions));
                globalsInRegions.addRow("Mapped reads, both in pair",
                                   sdf.formatLong(numPairedReadsInRegions - numSingletonsInRegions) + " / "
                                        + sdf.formatPercentage((getPercentageBothMatesPairedInRegions())));
                globalsInRegions.addRow("Mapped reads, singletons",
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                globalsInRegions.addRow("Mapped reads, only second in pair",
                        sdf.formatLong(numMappedSecondOfPairInRegions) + " / " +
                                sdf.formatPercentage(percentageOfMappedSecondOfPairInRegions));
                globalsInRegions.addRow("Mapped reads, both in pair",
                                   sdf.formatLong(numPairedReadsInRegions - numSingletonsInRegions) + " / "
                                        + sdf.formatPercentage((getPercentageBothMatesPairedInRegions())));
                globalsInRegions.addRow("Mapped reads, singletons",
                        sdf.formatLong(numSingletonsInRegions) + " / "
                                + sdf.formatPercentage(percentageSingletonsInRegions));
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                                sdf.formatPercentage(percentageOfMappedSecondOfPairInRegions));
                globalsInRegions.addRow("Mapped reads, both in pair",
                                   sdf.formatLong(numPairedReadsInRegions - numSingletonsInRegions) + " / "
                                        + sdf.formatPercentage((getPercentageBothMatesPairedInRegions())));
                globalsInRegions.addRow("Mapped reads, singletons",
                        sdf.formatLong(numSingletonsInRegions) + " / "
                                + sdf.formatPercentage(percentageSingletonsInRegions));


                globalsInRegions.addRow("Correct strand reads",
                        sdf.formatLong(numCorrectStrandReads) + " / " +
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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                        sdf.formatLong(numSingletonsInRegions) + " / "
                                + sdf.formatPercentage(percentageSingletonsInRegions));


                globalsInRegions.addRow("Correct strand reads",
                        sdf.formatLong(numCorrectStrandReads) + " / " +
                        sdf.formatPercentage(percentageCorrectStrandReads) );


                globalsInRegions.addRow("Clipped reads",
                                    sdf.formatInteger(numClippedReads) + " / " +
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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        }

        StatsKeeper.Section acgtContent = new StatsKeeper.Section("ACGT Content" + postfix);

        acgtContent.addRow("Number/percentage of A's", sdf.formatLong(getaNumber()) +
                " / " + sdf.formatPercentage(getaPercent()));
    acgtContent.addRow("Number/percentage of C's",sdf.formatLong(getcNumber()) +
                " / " + sdf.formatPercentage(getcPercent()));
    acgtContent.addRow("Number/percentage of T's", sdf.formatLong(gettNumber()) +
                " / " + sdf.formatPercentage(gettPercent()));
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

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        StatsKeeper.Section acgtContent = new StatsKeeper.Section("ACGT Content" + postfix);

        acgtContent.addRow("Number/percentage of A's", sdf.formatLong(getaNumber()) +
                " / " + sdf.formatPercentage(getaPercent()));
    acgtContent.addRow("Number/percentage of C's",sdf.formatLong(getcNumber()) +
                " / " + sdf.formatPercentage(getcPercent()));
    acgtContent.addRow("Number/percentage of T's", sdf.formatLong(gettNumber()) +
                " / " + sdf.formatPercentage(gettPercent()));
    acgtContent.addRow("Number/percentage of G's",sdf.formatLong(getgNumber()) +
                " / " + sdf.formatPercentage(getgPercent()));
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