List of exportSpectra() Examples

Examples of exportSpectra()

eu.isas.peptideshaker.followup.SpectrumExporter.exportSpectra()
Exports the spectra from different categories of PSMs according to the export type. Export format is mgf. @param destinationFolder the folder where to write the spectra @param waitingHandler waiting handler used to display progress and cancelthe process. Can be null. @param exportType the type of PSM to export @param sequenceMatchingPreferences the sequence matching preferences @throws IOException @throws MzMLUnmarshallerException @throws SQLException @throws ClassNotFoundException @throws InterruptedException

Examples of eu.isas.peptideshaker.followup.SpectrumExporter.exportSpectra()

                @Override
                public void run() {


                    try {
                        SpectrumExporter spectrumExporter = new SpectrumExporter(peptideShakerGUI.getIdentification());
                        spectrumExporter.exportSpectra(selectedFolder, progressDialog, SpectrumExporter.ExportType.getTypeFromIndex(spectrumValidationCmb.getSelectedIndex()), peptideShakerGUI.getSequenceMatchingPreferences());


                        boolean processCancelled = progressDialog.isRunCanceled();
                        progressDialog.setRunFinished();


                        if (!processCancelled) {

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Examples of eu.isas.peptideshaker.followup.SpectrumExporter.exportSpectra()

        File exportFolder = followUpCLIInputBean.getSpectrumExportFolder();
        if (!exportFolder.exists()) {
            exportFolder.mkdir();
        }
        SpectrumExporter spectrumExporter = new SpectrumExporter(identification);
        spectrumExporter.exportSpectra(exportFolder, waitingHandler, SpectrumExporter.ExportType.getTypeFromIndex(followUpCLIInputBean.getSpectrumExportTypeIndex()), sequenceMatchingPreferences);
    }


    /**
     * Exports the accessions as specified in the follow-up input bean.
     *

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