Examples of diagnosticLiftover()


Examples of htsjdk.samtools.liftover.LiftOver.diagnosticLiftover()

            if (toInterval != null) {
                toIntervals.add(toInterval);
            } else {
                anyFailed = true;
                LOG.warn("Liftover failed for ", fromInterval, "(len ", fromInterval.length(), ")");
                final List<LiftOver.PartialLiftover> partials = liftOver.diagnosticLiftover(fromInterval);
                for (final LiftOver.PartialLiftover partial : partials) {
                    LOG.info(partial);
                }
            }
        }
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