List of binNumber() Examples

Examples of binNumber()

net.sf.mzmine.util.Range.binNumber()
Splits the range in numOfBins bins and then returns the index of the bin which contains given value. Indexes are from 0 to (numOfBins - 1).

Examples of net.sf.mzmine.util.Range.binNumber()

      final Scan scan = origDataFile.getScan(scanNumbers[scanIndex]);


      // Process data points.
      for (final DataPoint dataPoint : scan.getDataPoints()) {


        final int bin = mzRange.binNumber(numBins, dataPoint.getMZ());
        final double value = chromatograms[bin][scanIndex];
        chromatograms[bin][scanIndex] = Math.max(value,
            dataPoint.getIntensity());
      }
      progress++;

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Examples of net.sf.mzmine.util.Range.binNumber()

      final Scan scan = origDataFile.getScan(scanNumbers[scanIndex]);


      // Process data points.
      for (final DataPoint dataPoint : scan.getDataPoints()) {


        chromatograms[mzRange.binNumber(numBins, dataPoint.getMZ())][scanIndex] += dataPoint
            .getIntensity();
      }
      progress++;
    }

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Examples of net.sf.mzmine.util.Range.binNumber()

    int i = 0;
    for (final DataPoint dp : dataPoints) {


      // Subtract baseline.
      final double mz = dp.getMZ();
      final int bin = mzRange.binNumber(numBins, mz);
      final double baselineIntenstity = baselines[bin][scanIndex];
      newDataPoints[i++] = baselineIntenstity <= 0.0
          ? new SimpleDataPoint(dp)
          : new SimpleDataPoint(mz, Math.max(0.0, dp.getIntensity()
              - baselineIntenstity));

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Examples of net.sf.mzmine.util.Range.binNumber()

    int i = 0;
    for (final DataPoint dp : dataPoints) {


      // Subtract baseline.
      final double mz = dp.getMZ();
      final int bin = mzRange.binNumber(numBins, mz);
      final double baselineIntenstity = baselines[bin][scanIndex];
      newDataPoints[i++] = baselineIntenstity <= 0.0
          ? new SimpleDataPoint(dp)
          : new SimpleDataPoint(mz, Math.max(0.0, dp.getIntensity()
              * (1.0 - baselineIntenstity)));

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