Examples of addStringCommand()

Examples of stallone.util.CommandLineParser.addStringCommand()

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        parser.addDoubleArgument("hmmconv", true, -0.1, Double.NEGATIVE_INFINITY,Double.POSITIVE_INFINITY); // dectol
        parser.addIntArgument("hmmconv", true, 1000, 0, Integer.MAX_VALUE); // niter
        // option
        parser.addCommand("direct", false);
        // output
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
        {
            return false;
        }
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Examples of stallone.util.CommandLineParser.addStringCommand()

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        // option estimate
        parser.addCommand("estimate", false);
        parser.addIntArgument("estimate", true); // tau
        parser.addIntArgument("estimate", true); // average window
        // output
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
        {
            return false;
        }
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Examples of stallone.util.CommandLineParser.addStringCommand()

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    public boolean parseArguments(String[] args)
            throws FileNotFoundException, IOException
    {
        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringCommand("i", true);
        // input
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
        {
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Examples of stallone.util.CommandLineParser.addStringCommand()

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    {
        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringCommand("i", true);
        // input
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
        {
            return false;
        }
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Examples of stallone.util.CommandLineParser.addStringCommand()

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        parser.addIntArgument("tau", true); // average window
        parser.addIntCommand("nhidden", true);
        parser.addDoubleCommand("requestederror", false);
        parser.addIntCommand("maxrefinementsteps", false);
        // output
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
        {
            return false;
        }
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Examples of stallone.util.CommandLineParser.addStringCommand()

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    public boolean parseArguments(String[] args)
            throws FileNotFoundException, IOException
    {
        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringCommand("iT", true);
        parser.addStringCommand("ipout", true);
        parser.addStringArrayCommand("idata", true);
        parser.addIntCommand("lag", true);

        // output
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Examples of stallone.util.CommandLineParser.addStringCommand()

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            throws FileNotFoundException, IOException
    {
        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringCommand("iT", true);
        parser.addStringCommand("ipout", true);
        parser.addStringArrayCommand("idata", true);
        parser.addIntCommand("lag", true);

        // output
        parser.addStringCommand("o", true);
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Examples of stallone.util.CommandLineParser.addStringCommand()

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        parser.addStringCommand("ipout", true);
        parser.addStringArrayCommand("idata", true);
        parser.addIntCommand("lag", true);

        // output
        parser.addStringCommand("o", true);
       
        // switch
        parser.addCommand("autocorrelations", false);
        parser.addCommand("timescales", false);
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Examples of stallone.util.CommandLineParser.addStringCommand()

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    public boolean parseArguments(String[] args)
            throws FileNotFoundException, IOException
    {
        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringCommand("i", true);

        // reference lag time
        parser.addIntCommand("reflag", true);
        parser.addDoubleCommand("minoverlap", true);
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Examples of stallone.util.CommandLineParser.addStringCommand()

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        CommandLineParser parser = new CommandLineParser();
        // input
        parser.addStringArrayCommand("i", true);
        parser.addIntCommand("ncluster", true);
        parser.addIntCommand("nsplit", true);
        parser.addStringCommand("o", true);

        if (!parser.parse(args))
            return false;

       
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