Examples of addPeakList()

Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      newPeakList.addRow(newRow);
    }

    // Add new peaklist to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(newPeakList);

    setStatus(TaskStatus.FINISHED);

    logger.info("Finished chromatogram builder on " + dataFile);
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      newPeakList.addRow(entry);
      processedScans++;
    }

    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(newPeakList);
    logger.info("Finished MS/MS peak builder on " + dataFile + ", "
        + processedScans + " scans processed");

    setStatus(TaskStatus.FINISHED);
  }
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      gap.noMoreOffers();
    }

    // Append processed peak list to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(processedPeakList);

    // Add task description to peakList
    processedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Targeted peak detection ", parameters));
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      if (!isCanceled()) {

        // Add new peak-list to the project.
        final MZmineProject currentProject = MZmineCore
            .getCurrentProject();
        currentProject.addPeakList(newPeakList);

        // Remove the original peak-list if requested.
        if (removeOriginal) {

          currentProject.removePeakList(origPeakList);
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      }
    }

    // Append processed peak list to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(processedPeakList);

    // Add task description to peakList
    processedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Gap filling ", parameters));
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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    }

    // Append processed peak list to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(processedPeakList);

    // Add task description to peakList
    processedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Gap filling using RT and m/z range", parameters));
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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      processedRows++;
    }

    // Add new peaklist to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(newPeakList);

    // Remove the original peaklist if requested
    if (removeOriginal)
      currentProject.removePeakList(originalPeakList);
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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          if (!isCanceled()) {

            // Add new peaklist to the project.
            final MZmineProject currentProject = MZmineCore
                .getCurrentProject();
            currentProject.addPeakList(newPeakList);

            // Remove the original peaklist if requested.
            if (parameters.getParameter(AUTO_REMOVE).getValue()) {

              currentProject.removePeakList(originalPeakList);
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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        if (!isCanceled()) {

          // Add new peakList to the project.
          final MZmineProject project = MZmineCore
              .getCurrentProject();
          project.addPeakList(filteredPeakList);

          // Remove the original peakList if requested.
          if (parameters.getParameter(
              DuplicateFilterParameters.autoRemove).getValue()) {
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Examples of net.sf.mzmine.project.MZmineProject.addPeakList()

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    }

    // Add new peakList to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(deisotopedPeakList);

    // Load previous applied methods
    for (PeakListAppliedMethod proc : peakList.getAppliedMethods()) {
      deisotopedPeakList.addDescriptionOfAppliedTask(proc);
    }
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