List of addPeak() Examples

Examples of addPeak()

Examples of net.sf.mzmine.data.PeakListRow.addPeak()

      if (originalPeak != null) {
        SimpleChromatographicPeak normalizedPeak = new SimpleChromatographicPeak(
            originalPeak);
        PeakUtils.copyPeakProperties(originalPeak, normalizedPeak);
        normalizedPeak.setRT(normalizedRT);
        normalizedRow.addPeak(file, normalizedPeak);
      }
    }


    return normalizedRow;

View Full Code Here

Examples of net.sf.mzmine.data.PeakListRow.addPeak()

          alignedPeakList.addRow(targetRow);
        }


        // Add all peaks from the original row to the aligned row
        for (RawDataFile file : row.getRawDataFiles()) {
          targetRow.addPeak(file, row.getPeak(file));
        }


        // Add all non-existing identities from the original row to the
        // aligned row
        PeakUtils.copyPeakListRowProperties(row, targetRow);

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()


    // Add the chromatograms to the new peak list
    for (ChromatographicPeak finishedPeak : chromatograms) {
      SimplePeakListRow newRow = new SimplePeakListRow(newPeakID);
      newPeakID++;
      newRow.addPeak(dataFile, finishedPeak);
      newPeakList.addRow(newRow);
    }


    // Add new peaklist to the project
    MZmineProject currentProject = MZmineCore.getCurrentProject();

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()

              bestScan.getRetentionTime()), new Range(
              scan.getPrecursorMZ()), new Range(
              maxPoint.getIntensity()));


      PeakListRow entry = new SimplePeakListRow(scan.getScanNumber());
      entry.addPeak(dataFile, c);


      newPeakList.addRow(entry);
      processedScans++;
    }

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()

              assert maxDataPoint != null;


              if (!isCanceled() && maxScanNumber >= 0) {


                // Create a new peak.
                newRow.addPeak(
                    dataFile,
                    new SimpleChromatographicPeak(
                        dataFile,
                        maxDataPoint.getMZ(),
                        peak.getRT(),

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()

                rtRange, intTolerance);


            gaps.add(newGap);


          } else {
            newRow.addPeak(dataFile, sourcePeak);
          }


        }


        // Stop processing this file if there are no gaps

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()

        if (currentPeak == null)
          currentPeak = fillGap(sourceRow, column);


        // If a peak was found or created, add it
        if (currentPeak != null)
          newRow.addPeak(column, currentPeak);


      }


      processedPeakList.addRow(newRow);

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()


          ChromatographicPeak shapePeak = (ChromatographicPeak) shapeModelConstruct
              .newInstance(peak, scanNumbers, intensities,
                  retentionTimes, resolution);


          newRow.addPeak(shapePeak.getDataFile(), shapePeak);
        }


      } catch (Exception e) {
        String message = "Error trying to make an instance of shape model class "
            + shapeModelClass;

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()


      // Add peaks to the new peak list.
      for (final ChromatographicPeak peak : peaks) {


        final PeakListRow newRow = new SimplePeakListRow(peakId++);
        newRow.addPeak(dataFile, peak);
        resolvedPeaks.addRow(newRow);
      }


      processedRows++;
    }

View Full Code Here

Examples of net.sf.mzmine.data.impl.SimplePeakListRow.addPeak()

    PeakListRow newRow = new SimplePeakListRow(ID);
    try {
      for (PeakListRow row : this.peaks) {
        if (row != null) {
          for (ChromatographicPeak peak : row.getPeaks()) {
            newRow.addPeak(peak.getDataFile(), peak);
          }
        }
      }
    } catch (NullPointerException e) {
      e.printStackTrace();

View Full Code Here

0 1 2 3 4

TOP

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.