Examples of addManualValidation()

Examples of eu.isas.peptideshaker.filtering.PeptideFilter.addManualValidation()

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                    peptideFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getPeptideStarFilters().put(peptideFilter.getName(), peptideFilter);
                } else {
                    peptideFilter = filterPreferences.getPeptideStarFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                peptideFilter.addManualValidation(match);
            }

            psParameter.setStarred(true);
            identification.updatePeptideMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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Examples of eu.isas.peptideshaker.filtering.PeptideFilter.addManualValidation()

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                    peptideFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getPeptideHideFilters().put(peptideFilter.getName(), peptideFilter);
                } else {
                    peptideFilter = filterPreferences.getPeptideHideFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                peptideFilter.addManualValidation(match);
            }

            psParameter.setHidden(true);
            identification.updatePeptideMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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Examples of eu.isas.peptideshaker.filtering.ProteinFilter.addManualValidation()

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                    proteinFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getProteinStarFilters().put(proteinFilter.getName(), proteinFilter);
                } else {
                    proteinFilter = filterPreferences.getProteinStarFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                proteinFilter.addManualValidation(match);
            }

            psParameter.setStarred(true);
            identification.updateProteinMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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Examples of eu.isas.peptideshaker.filtering.ProteinFilter.addManualValidation()

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                    proteinFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getProteinHideFilters().put(proteinFilter.getName(), proteinFilter);
                } else {
                    proteinFilter = filterPreferences.getProteinHideFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                proteinFilter.addManualValidation(match);
            }

            psParameter.setHidden(true);
            identification.updateProteinMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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Examples of eu.isas.peptideshaker.filtering.PsmFilter.addManualValidation()

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                    psmFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getPsmStarFilters().put(psmFilter.getName(), psmFilter);
                } else {
                    psmFilter = filterPreferences.getPsmStarFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                psmFilter.addManualValidation(match);
            }

            psParameter.setStarred(true);
            identification.updateSpectrumMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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Examples of eu.isas.peptideshaker.filtering.PsmFilter.addManualValidation()

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                    psmFilter.setDescription("Manual selection via the graphical interface");
                    filterPreferences.getPsmHideFilters().put(psmFilter.getName(), psmFilter);
                } else {
                    psmFilter = filterPreferences.getPsmHideFilters().get(MatchFilter.MANUAL_SELECTION);
                }
                psmFilter.addManualValidation(match);
            }

            psParameter.setHidden(true);
            identification.updateSpectrumMatchParameter(match, psParameter);
            peptideShakerGUI.setDataSaved(false);
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