Examples of addLocationInformation()


Examples of picard.sam.markduplicates.util.OpticalDuplicateFinder.addLocationInformation()

    // NB: these tests fails due to overflow in the duplicate finder test.  This has been the behavior previously, so keep it for now.
    @Test(dataProvider = "testParseReadNameDataProvider", enabled = false)
    public void testParseReadName(final String readName, final int tile, final int x, final int y) {
        OpticalDuplicateFinder opticalDuplicateFinder = new OpticalDuplicateFinder();
        OpticalDuplicateFinder.PhysicalLocation loc = new ReadEndsForMarkDuplicates();
        Assert.assertTrue(opticalDuplicateFinder.addLocationInformation(readName, loc));
        Assert.assertEquals(loc.getTile(), tile);
        Assert.assertEquals(loc.getX(), x);
        Assert.assertEquals(loc.getY(), y);
    }
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