List of addCompartment() Examples

Examples of addCompartment()

org.sbml.jsbml.Model.addCompartment()
Adds a Compartment instance to the listOfCompartments of this Model. @param compartment @return {@code true} if the {@link #listOfCompartments} was changed asa result of this call.

Examples of org.sbml.jsbml.Model.addCompartment()

            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              compartment.initDefaults();
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("species")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)

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Examples of org.sbml.jsbml.Model.addCompartment()


        if (compartmentsIds != null) {
          for (int i = 0; i < compartmentsIds.length; i++) {
            Compartment relatedCompartment = model.getCompartment(compartmentsIds[i]);


            subModel.addCompartment(relatedCompartment.clone());
            processUnitsMap(unitsMap, model, relatedCompartment.getUnits());


            // check compartment type
            if ((relatedCompartment.getCompartmentTypeInstance() != null)
               && (subModel.getCompartmentType(relatedCompartment.getCompartmentType()) == null)) {

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Examples of org.sbml.jsbml.Model.addCompartment()

    model.unsetListOfCompartments();
    // add ListOfCompartments
    model.setListOfCompartments(listOfC);
    Compartment c3 = new Compartment(level, version);
    c3.setId("c3");
    model.addCompartment(c3);
    c3.setId("c4");
    
    /*
     * Species and Species References
     */

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Examples of org.sbml.jsbml.Model.addCompartment()

              return unitDefinition;
            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("specie")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)) {

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Examples of org.sbml.jsbml.Model.addCompartment()

            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              compartment.initDefaults();
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("species")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)

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Examples of org.sbml.jsbml.Model.addCompartment()

              return unitDefinition;
            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("specie")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)) {

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Examples of org.sbml.jsbml.Model.addCompartment()

            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              compartment.initDefaults();
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("species")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)

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Examples of org.sbml.jsbml.Model.addCompartment()

    model.unsetListOfCompartments();
    // add ListOfCompartments
    model.setListOfCompartments(listOfC);
    Compartment c3 = new Compartment(level, version);
    c3.setId("c3");
    model.addCompartment(c3);
    c3.setId("c4");
    
    /*
     * Species and Species References
     */

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Examples of org.sbml.jsbml.Model.addCompartment()

              return unitDefinition;
            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              model.addCompartment(compartment);


              return compartment;
            } else if (elementName.equals("specie")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfSpecies)) {

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Examples of org.sbml.jsbml.Model.addCompartment()

    model.unsetListOfCompartments();
    // add ListOfCompartments
    model.setListOfCompartments(listOfC);
    Compartment c3 = new Compartment(level, version);
    c3.setId("c3");
    model.addCompartment(c3);
    c3.setId("c4");
    
    /*
     * Species and Species References
     */

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