Examples of addAtom()

Examples of org.apache.cassandra.db.ColumnFamily.addAtom()

1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
        Mutation mutation = new Mutation(Keyspace.SYSTEM_KS, SystemKeyspace.getSchemaKSKey(ksName));
        ColumnFamily cf = mutation.addOrGet(SchemaColumnFamiliesCf);
        int ldt = (int) (System.currentTimeMillis() / 1000);

        Composite prefix = SchemaColumnFamiliesCf.comparator.make(cfName);
        cf.addAtom(new RangeTombstone(prefix, prefix.end(), timestamp, ldt));

        for (ColumnDefinition cd : allColumns())
            cd.deleteFromSchema(mutation, timestamp);

        for (TriggerDefinition td : triggers.values())
View Full Code Here

Examples of org.apache.cassandra.db.ColumnFamily.addAtom()

113
114
115
116
117
118
119
120
121
122
123
    private static ColumnFamily updatesWithPaxosTime(ColumnFamily updates, UUID ballot)
    {
        ColumnFamily cf = updates.cloneMeShallow();
        long t = UUIDGen.microsTimestamp(ballot);
        for (Column column : updates)
            cf.addAtom(column.withUpdatedTimestamp(t));
        return cf;
    }

    @Override
    public String toString()
View Full Code Here

Examples of org.apache.cassandra.db.ColumnFamily.addAtom()

71
72
73
74
75
76
77
78
79
80
81
    {
        ColumnFamily cf = rm.addOrGet(SystemKeyspace.SCHEMA_TRIGGERS_CF);
        int ldt = (int) (System.currentTimeMillis() / 1000);
        ColumnNameBuilder builder = CFMetaData.SchemaTriggerCf.getCfDef().getColumnNameBuilder();
        builder.add(ByteBufferUtil.bytes(cfName)).add(ByteBufferUtil.bytes(tentry.getKey()));
        cf.addAtom(new RangeTombstone(builder.build(), builder.buildAsEndOfRange(), modificationTimestamp, ldt));
    }

    public static void update(CFMetaData cfm, String triggerName, String clazz)
    {
        Map<String, Map<String, String>> existingTriggers = cfm.getTriggers();
View Full Code Here

Examples of org.apache.cassandra.db.ColumnFamily.addAtom()

121
122
123
124
125
126
127
128
129
130
131
            if (isRange)
            {
                assert toRemove.isEmpty();
                ByteBuffer start = builder.build();
                ByteBuffer end = builder.buildAsEndOfRange();
                cf.addAtom(params.makeRangeTombstone(start, end));
            }
            else
            {
                // Delete specific columns
                if (cfDef.isCompact)
View Full Code Here

Examples of org.biojava.bio.structure.AminoAcidImpl.addAtom()

77
78
79
80
81
82
83
84
85
86
87
    try {
      g.setPDBName("GLY");
    } catch (PDBParseException e) {
      e.printStackTrace();
    }
    g.addAtom(a);

    Chain c = new ChainImpl();
    c.addGroup(g);

    Structure s = new StructureImpl();
View Full Code Here

Examples of org.biojava.bio.structure.Group.addAtom()

77
78
79
80
81
82
83
84
85
86
87
    try {
      g.setPDBName("GLY");
    } catch (PDBParseException e) {
      e.printStackTrace();
    }
    g.addAtom(a);

    Chain c = new ChainImpl();
    c.addGroup(g);

    Structure s = new StructureImpl();
View Full Code Here

Examples of org.openscience.cdk.AtomContainer.addAtom()

115
116
117
118
119
120
121
122
123
124
125
       
        IAtomContainer ac = new AtomContainer();
        if (atoms.size() != 0) {
           ac = atoms.get(0).getBuilder().newInstance(IAtomContainer.class);
           for (IAtom atom : atoms) {
              ac.addAtom(atom);
           }
        }
       
        for (IBond bond : bonds) {
           ac.addBond(bond);
View Full Code Here

Examples of org.openscience.cdk.interfaces.IAtomContainer.addAtom()

153
154
155
156
157
158
159
160
161
162
163
            }
            if (atomInRange != null) {
                IAtomContainer tocopyclone =
                    atomInRange.getBuilder().newInstance(IAtomContainer.class);
                try {
          tocopyclone.addAtom((IAtom) atomInRange.clone());
        } catch (CloneNotSupportedException e1) {
          // TODO Auto-generated catch block
          e1.printStackTrace();
        }
                addToClipboard(sysClip, tocopyclone);
View Full Code Here

Examples of org.openscience.cdk.interfaces.IAtomContainer.addAtom()

166
167
168
169
170
171
172
173
174
175
176
                IBond bond = renderModel.getHighlightedBond();
                if (bond != null) {
                    IAtomContainer tocopyclone =
                        bond.getBuilder().newInstance(IAtomContainer.class);
                    try {
                        tocopyclone.addAtom((IAtom) bond.getAtom(0).clone());
                        tocopyclone.addAtom((IAtom) bond.getAtom(1).clone());
                    } catch (CloneNotSupportedException e1) {
                        e1.printStackTrace();
                    }
                    tocopyclone.addBond(bond.getBuilder().newInstance(IBond.class,tocopyclone.getAtom(0), tocopyclone.getAtom(1), bond.getOrder()));
View Full Code Here

Examples of org.openscience.cdk.interfaces.IAtomContainer.addAtom()

167
168
169
170
171
172
173
174
175
176
177
                if (bond != null) {
                    IAtomContainer tocopyclone =
                        bond.getBuilder().newInstance(IAtomContainer.class);
                    try {
                        tocopyclone.addAtom((IAtom) bond.getAtom(0).clone());
                        tocopyclone.addAtom((IAtom) bond.getAtom(1).clone());
                    } catch (CloneNotSupportedException e1) {
                        e1.printStackTrace();
                    }
                    tocopyclone.addBond(bond.getBuilder().newInstance(IBond.class,tocopyclone.getAtom(0), tocopyclone.getAtom(1), bond.getOrder()));
                    addToClipboard(sysClip, tocopyclone);
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.