Examples of activeReporting()

Examples of org.bioinfo.ngs.qc.qualimap.process.BamStatsAnalysis.activeReporting()

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            bamQC.setComputeOutsideStats(bamDialog.getComputeOutsideRegions());
            regionsAvailable = true;
    }

    // reporting
    bamQC.activeReporting(outputDirPath.toString());

    // setup logging
        AnalysisDialogLoggerThread loggerThread = new AnalysisDialogLoggerThread(bamDialog);
        bamQC.setLoggerThread(loggerThread);
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Examples of org.bioinfo.ngs.qc.qualimap.process.BamStatsAnalysis.activeReporting()

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      bamQC.setSelectedRegions(gffFile);
      bamQC.setComputeOutsideStats(computeOutsideStats);
    }

    // reporting
    bamQC.activeReporting(outdir);
        if (coverageReportFile.length() > 0) {
            bamQC.setPathToCoverageReport(coverageReportFile);
        }

    logger.println("Starting bam qc....");
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