Examples of ProtoNetworkDescriptor

org.openbel.framework.core.protonetwork.ProtoNetworkDescriptor
ProtoNetworkDescriptor represents a file descriptor for a {@link ProtoNetwork}. @author Anthony Bargnesi {@code }

Examples of org.openbel.framework.core.protonetwork.ProtoNetworkDescriptor

        final StringBuilder bldr = new StringBuilder();
        bldr.append("Saving network");
        stageOutput(bldr.toString());


        long t1 = currentTimeMillis();
        ProtoNetworkDescriptor ret =
                p2.stage4WriteEquivalentProtoNetwork(eqNetwork,
                        artifactPath.getAbsolutePath());


        if (withDebug()) {
            try {

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Examples of org.openbel.framework.core.protonetwork.ProtoNetworkDescriptor

        // bldr.append(protoNetwork);
        // phaseOutput(bldr.toString());


        phaseOutput(format("=== %s ===", getApplicationName()));


        ProtoNetworkDescriptor pnd = new BinaryProtoNetworkDescriptor(
                protoNetwork);


        BinaryProtoNetworkExternalizer bpne =
                new BinaryProtoNetworkExternalizer();
        ProtoNetwork gpn = null;

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Examples of org.openbel.framework.core.protonetwork.ProtoNetworkDescriptor

        try {
            Iterator<ProtoNetworkDescriptor> it =
                    protoNetworkDescriptors.iterator();


            // Grab first proto network and iteratively merge the rest.
            ProtoNetworkDescriptor pnd = it.next();
            mergedNetwork = protoNetworkService.read(pnd);
            while (it.hasNext()) {
                ProtoNetwork nextPn = protoNetworkService.read(it.next());
                protoNetworkService.merge(mergedNetwork, nextPn);
            }

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Examples of org.openbel.framework.core.protonetwork.ProtoNetworkDescriptor

        }
        if (protoNetworkRoot == null) {
            throw new InvalidArgument("protoNetworkRoot", protoNetworkRoot);
        }


        ProtoNetworkDescriptor protoNetworkDescriptor = null;
        try {
            protoNetworkDescriptor = protoNetworkService.write(
                    protoNetworkRoot, protoNetwork);
        } catch (ProtoNetworkError e) {
            error("Could not write out equivalent proto network.");

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