Examples of ParameterTable


Examples of com.sun.jdo.spi.persistence.support.sqlstore.query.jqlc.ParameterTable

    public Object executeWithArray (Object[] parameters)
    {
        synchronized (this.paramtab)
        {
            compile();
            ParameterTable params = new ParameterTable(paramtab);
            params.initValueHandling();
            params.setValues(parameters);
            params.checkUnboundParams();
            return doExecute(params);
        }

    }
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Examples of com.sun.jdo.spi.persistence.support.sqlstore.query.jqlc.ParameterTable

     */
    private void readObject(java.io.ObjectInputStream in)
        throws java.io.IOException, ClassNotFoundException
    {
        in.defaultReadObject();
        this.paramtab = new ParameterTable();
        this.createdBySerialization = true;
    }
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Examples of de.lmu.ifi.dbs.elki.gui.util.ParameterTable

          updateParameterTable();
        }
      });

      // Create parameter table
      parameterTable = new ParameterTable(parameterModel, parameters);
      // Create the scroll pane and add the table to it.
      JScrollPane scrollPane = new JScrollPane(parameterTable);

      // Add the scroll pane to this panel.
      GridBagConstraints constraints = new GridBagConstraints();
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Examples of de.lmu.ifi.dbs.elki.gui.util.ParameterTable

          updateParameterTable();
        }
      });

      // Create parameter table
      parameterTable = new ParameterTable(parameterModel, parameters);
      // Create the scroll pane and add the table to it.
      JScrollPane scrollPane = new JScrollPane(parameterTable);

      // Add the scroll pane to this panel.
      GridBagConstraints constraints = new GridBagConstraints();
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

    private int process() {
        int equivalences = 0;

        // Establish access to all the necessary proto-network parts
        final ParameterTable pt = network.getParameterTable();
        final TableParameter[] params = pt.getTableParameterArray();
        final Map<TableParameter, Integer> tpIdx = pt.getTableParameterIndex();

        // Get the global index, clear it, and mark the baseline global index
        final Map<Integer, Integer> globalIndex = pt.getGlobalIndex();
        final Map<Integer, SkinnyUUID> globalUUIDs = pt.getGlobalUUIDs();
        globalIndex.clear();
        globalUUIDs.clear();
        int gi = 0;

        // Map UUID strings to global index (inverse of globalUUIDs)
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

            ProtoNetwork protoNetwork2, int documentId,
            Map<Integer, Integer> termMap) {
        TermTable termTable = protoNetwork2.getTermTable();
        TermParameterMapTable mapTable =
                protoNetwork2.getTermParameterMapTable();
        ParameterTable parameterTable = protoNetwork2.getParameterTable();

        Term termToMerge = termTable.getIndexedTerms().get(termId);

        // tables for proto network we're merging into (1)
        final TermTable mtt = protoNetwork1.getTermTable();
        final ParameterTable mpt = protoNetwork1.getParameterTable();
        final TermParameterMapTable mtpmt =
                protoNetwork1.getTermParameterMapTable();
        final ProtoNodeTable mpnt = protoNetwork1.getProtoNodeTable();

        // if p1 contains an equivalent Term then return it's inndex without
        // adding a new one.
        Integer p1Index = mtt.getVisitedTerms().get(termToMerge);
        if (p1Index != null) {
            termMap.put(termId, p1Index);
            return p1Index;
        }

        List<Integer> newTermParameterIndices = new ArrayList<Integer>();
        List<Integer> termParameterIndices = mapTable.getTermParameterIndex()
                .get(termId);

        if (hasItems(termParameterIndices)) {
            for (Integer termParameterIndex : termParameterIndices) {
                TableParameter parameter = parameterTable.
                        getIndexTableParameter().get(termParameterIndex);
                newTermParameterIndices.add(mpt
                        .addTableParameter(parameter));
            }
        }

        Integer newTermIndex = mtt.addTerm(termToMerge);
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

     * @throws Exception
     */
    @Test
    public void validateGlobalUUIDs() throws Exception {
        be.equivalence();
        ParameterTable pt = pn.getParameterTable();
        TableParameter[] tpa = pt.getTableParameterArray();
        int j = 0; // idx to lookup UUIDs from list
        for (int i = 0; i < tpa.length; i = i + 2) { // increment for each pair of equivalent term params
            TableParameter tp1 = tpa[i];
            TableParameter tp2 = tpa[i + 1];
            Integer idx1 = pt.getTableParameterIndex().get(tp1);
            Integer idx2 = pt.getTableParameterIndex().get(tp2);
            Integer gi1 = pt.getGlobalIndex().get(idx1);
            Integer gi2 = pt.getGlobalIndex().get(idx2);
            Assert.assertEquals("Global ID for indices " + i + "and " + (i + 1)
                    + " failed equality", gi1, gi2);
            Assert.assertEquals("Global UUID for indices " + i + "and "
                    + (i + 1) + " failed equality", uuids.get(j++), pt
                    .getGlobalUUIDs().get(gi1));
        }
    }
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

                new ProtoNetworkBuilder(document);
        ProtoNetwork protoNetwork = protoNetworkBuilder.buildProtoNetwork();

        //Test extracted symbols
        NamespaceTable namespaceTable = protoNetwork.getNamespaceTable();
        ParameterTable parameterTable = protoNetwork.getParameterTable();
        TermTable termTable = protoNetwork.getTermTable();
        Namespace hgncNs =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/ns/hgnc-approved-symbols.belns");

        //check eg default namespace and hgnc specified namespace
        assertEquals(3, namespaceTable.getNamespaces().size());
        assertEquals(11, parameterTable.getTableParameters().size());

        assertEquals(9, termTable.getTermValues().size());
        assertTrue(parameterTable.getTableParameters().contains(
                new TableParameter(new TableNamespace(hgncNs), "AIFM1")));
        assertTrue(termTable.getTermValues().contains("proteinAbundance(#)"));
        assertTrue(termTable.getTermValues().contains("geneAbundance(#)"));

        //Test extracted statements
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

            }
        }

        // Establish set of UUIDs relevant for the proto-network
        Set<SkinnyUUID> pnUUIDs = new HashSet<SkinnyUUID>();
        ParameterTable paramTbl = network.getParameterTable();
        TableParameter[] paramArr = paramTbl.getTableParameterArray();
        for (final TableParameter tp : paramArr) {
            if (!validParameter(tp)) {
                continue;
            }
            TableNamespace namespace = tp.getNamespace();
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Examples of org.openbel.framework.common.protonetwork.model.ParameterTable

            }
        }

        // Establish set of UUIDs relevant for the proto-network
        Set<SkinnyUUID> pnUUIDs = new HashSet<SkinnyUUID>();
        ParameterTable paramTbl = network.getParameterTable();
        TableParameter[] paramArr = paramTbl.getTableParameterArray();
        for (final TableParameter tp : paramArr) {
            if (!validParameter(tp)) {
                continue;
            }
            TableNamespace namespace = tp.getNamespace();
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