Package org.broad.igv.track

Examples of org.broad.igv.track.TrackProperties


    public void readHeaderLine(String line) {
        if (header == null) {
            header = new FeatureFileHeader();
        }
        if (line.startsWith("#track") || line.startsWith("##track")) {
            trackProperties = new TrackProperties();
            ParsingUtils.parseTrackLine(line, trackProperties);
            header.setTrackProperties(trackProperties);
        } else if (line.startsWith("##gff-version") && line.endsWith("3")) {
            helper = new GFF3Helper();
        } else if (line.startsWith("#nodecode") || line.startsWith("##nodecode")) {
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                                } catch (Exception e) {
                                    log.error("Error converting track type: " + tokens[1]);
                                }
                            }
                        } else if (nextLine.startsWith("#track") || nextLine.startsWith("track")) {
                            TrackProperties tp = new TrackProperties();
                            ParsingUtils.parseTrackLine(nextLine, tp);
                            setTrackProperties(tp);
                            if (tp.isGffTags()) {
                                gffTags = true;
                            }
                        } else if (nextLine.startsWith("#coords")) {
                            try {
                                String[] tokens = Globals.equalPattern.split(nextLine);
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