Package org.biopax.paxtools.model

Examples of org.biopax.paxtools.model.Model

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      BioPAXGraph graph = (BioPAXGraph) root;

      if (graph.isMechanistic())
      {
        graph.forgetLayout();
        Model model = graph.getBiopaxModel();
        PathwayHolder p = graph.getPathway();
        p.removeFromModel(model);

        main.getAllPathwayNames().remove(p.getName());
      }
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Related Classes of org.biopax.paxtools.model.Model

  • gem.BioPAXWriter
  • org.gvt.action.DeletePathwayAction
  • org.gvt.action.ExportToSIFAction
  • org.gvt.action.LocalCommonStreamQueryAction
  • org.gvt.action.LocalCompartmentQueryAction
  • org.gvt.action.LocalGoIQueryAction
  • org.gvt.action.LocalNeighborhoodQueryAction
  • org.gvt.action.LocalPathIterationQueryAction
  • org.gvt.action.LocalPoIQueryAction
  • org.gvt.action.MergeAction
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