Package org.apache.mahout.common.distance

Examples of org.apache.mahout.common.distance.DistanceMeasure

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  }

  @Test
  public void testCanopyClassification() {
    List<Model<VectorWritable>> models = new ArrayList<Model<VectorWritable>>();
    DistanceMeasure measure = new ManhattanDistanceMeasure();
    models.add(new Canopy(new DenseVector(2).assign(1), 0, measure));
    models.add(new Canopy(new DenseVector(2), 1, measure));
    models.add(new Canopy(new DenseVector(2).assign(-1), 2, measure));
    AbstractVectorClassifier classifier = new VectorModelClassifier(models);
    Vector pdf = classifier.classify(new DenseVector(2));
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  }

  @Test
  public void testClusterClassification() {
    List<Model<VectorWritable>> models = new ArrayList<Model<VectorWritable>>();
    DistanceMeasure measure = new ManhattanDistanceMeasure();
    models.add(new Cluster(new DenseVector(2).assign(1), 0, measure));
    models.add(new Cluster(new DenseVector(2), 1, measure));
    models.add(new Cluster(new DenseVector(2).assign(-1), 2, measure));
    AbstractVectorClassifier classifier = new VectorModelClassifier(models);
    Vector pdf = classifier.classify(new DenseVector(2));
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  }

  @Test
  public void testMSCanopyClassification() {
    List<Model<VectorWritable>> models = new ArrayList<Model<VectorWritable>>();
    DistanceMeasure measure = new ManhattanDistanceMeasure();
    models.add(new MeanShiftCanopy(new DenseVector(2).assign(1), 0, measure));
    models.add(new MeanShiftCanopy(new DenseVector(2), 1, measure));
    models.add(new MeanShiftCanopy(new DenseVector(2).assign(-1), 2, measure));
    AbstractVectorClassifier classifier = new VectorModelClassifier(models);
    try {
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  }

  @Test
  public void testSoftClusterClassification() {
    List<Model<VectorWritable>> models = new ArrayList<Model<VectorWritable>>();
    DistanceMeasure measure = new ManhattanDistanceMeasure();
    models.add(new SoftCluster(new DenseVector(2).assign(1), 0, measure));
    models.add(new SoftCluster(new DenseVector(2), 1, measure));
    models.add(new SoftCluster(new DenseVector(2).assign(-1), 2, measure));
    AbstractVectorClassifier classifier = new VectorModelClassifier(models);
    Vector pdf = classifier.classify(new DenseVector(2));
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  }

  @Test
  public void testRepresentativePoints() throws Exception {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    Configuration conf = new Configuration();
    // run using MR reference point calculation
    CanopyDriver.run(conf, testdata, output, measure, 3.1, 1.1, true, true);
    int numIterations = 2;
    Path clustersIn = new Path(output, "clusters-0");
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  }

  @Test
  public void testCluster0() throws IOException {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    initData(1, 0.25, measure);
    ClusterEvaluator evaluator = new ClusterEvaluator(representativePoints, clusters, measure);
    assertEquals("inter cluster density", 0.33333333333333315, evaluator.interClusterDensity(), EPSILON);
    assertEquals("intra cluster density", 0.3656854249492381, evaluator.intraClusterDensity(), EPSILON);
  }
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  }

  @Test
  public void testCluster1() throws IOException {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    initData(1, 0.5, measure);
    ClusterEvaluator evaluator = new ClusterEvaluator(representativePoints, clusters, measure);
    assertEquals("inter cluster density", 0.33333333333333315, evaluator.interClusterDensity(), EPSILON);
    assertEquals("intra cluster density", 0.3656854249492381, evaluator.intraClusterDensity(), EPSILON);
  }
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  }

  @Test
  public void testCluster2() throws IOException {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    initData(1, 0.75, measure);
    ClusterEvaluator evaluator = new ClusterEvaluator(representativePoints, clusters, measure);
    assertEquals("inter cluster density", 0.33333333333333315, evaluator.interClusterDensity(), EPSILON);
    assertEquals("intra cluster density", 0.3656854249492381, evaluator.intraClusterDensity(), EPSILON);
  }
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  }

  @Test
  public void testEmptyCluster() throws IOException {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    initData(1, 0.25, measure);
    Canopy cluster = new Canopy(new DenseVector(new double[] { 10, 10 }), 19, measure);
    clusters.add(cluster);
    List<VectorWritable> points = new ArrayList<VectorWritable>();
    representativePoints.put(cluster.getId(), points);
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  }

  @Test
  public void testSingleValueCluster() throws IOException {
    ClusteringTestUtils.writePointsToFile(referenceData, new Path(testdata, "file1"), fs, conf);
    DistanceMeasure measure = new EuclideanDistanceMeasure();
    initData(1, 0.25, measure);
    Canopy cluster = new Canopy(new DenseVector(new double[] { 0, 0 }), 19, measure);
    clusters.add(cluster);
    List<VectorWritable> points = new ArrayList<VectorWritable>();
    points.add(new VectorWritable(cluster.getCenter().plus(new DenseVector(new double[] { 1, 1 }))));
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Related Classes of org.apache.mahout.common.distance.DistanceMeasure

  • mia.clustering.ch10.InterClusterDistances
  • org.apache.mahout.clustering.canopy.CanopyConfigKeys
  • org.apache.mahout.clustering.canopy.CanopyDriver
  • org.apache.mahout.clustering.cdbw.TestCDbwEvaluator
  • org.apache.mahout.clustering.classify.ClusterClassificationDriver
  • org.apache.mahout.clustering.classify.ClusterClassificationMapper
  • org.apache.mahout.clustering.ClusteringUtils
  • org.apache.mahout.clustering.dirichlet.DirichletDriver
  • org.apache.mahout.clustering.dirichlet.models.DistributionDescription
  • org.apache.mahout.clustering.display.DisplayFuzzyKMeans
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