Examples of eu.scape_project.planning.model.SampleObject

        experiment.setDescription("Description");
        experiment.setSettings("Settings");
        experiment.setWorkflow(generateDigitalObject());


        Map<SampleObject, DetailedExperimentInfo> detailedInfo = experiment.getDetailedInfo();
        SampleObject sample1 = new SampleObject("Short name");
        DetailedExperimentInfo experimentInfo1 = new DetailedExperimentInfo();
        experimentInfo1.setSuccessful(true);
        experimentInfo1.setCpr("Cpr");
        experimentInfo1.setProgramOutput("Program output");
        experimentInfo1.getMeasurements().put("key", new Measurement("Measure id", "Value"));

    }


    private SampleObject parseSample(Element sample) {


        String uid = sample.attributeValue("uid");
        SampleObject sampleObject = new SampleObject(uid);
        sampleObject.setFullname(uid);
        List<Element> mimes = new ArrayList<Element>();
        List<Element> size = new ArrayList<Element>();
        List<Element> records = sample.elements("record");


        for (Element rec : records) {
            if (rec.attributeValue("name").equals("mimetype")) {
                mimes.add(rec);
            }


            if (rec.attributeValue("name").equals("size")) {
                size.add(rec);
            }
        }


        if (mimes.size() > 1) {
            sampleObject.setContentType("Conflict");
        } else if (mimes.size() == 1) {
            Element mimetype = (Element) mimes.get(0);
            sampleObject.setContentType(mimetype.attributeValue("value"));
        }


        if (size.size() == 1) {
            Element s = (Element) size.get(0);
            sampleObject.setSizeInBytes(Long.parseLong(s.attributeValue("value")));
        }


        FormatInfo info = this.getFormatInfo(sample, sampleObject.getContentType());
        sampleObject.setFormatInfo(info);


        return sampleObject;
    }

Examples of eu.scape_project.planning.model.SampleObject

Related Classes of eu.scape_project.planning.model.SampleObject