Examples of EncogFileSection

Examples of org.encog.persist.EncogFileSection

142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
   */
  @Override
  public final Object read(final InputStream is) {
    final SVM result = new SVM();
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("SVM")
          && section.getSubSectionName().equals("PARAMS")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      }
      if (section.getSectionName().equals("SVM")
          && section.getSubSectionName().equals("SVM-PARAM")) {
        final Map<String, String> params = section.parseParams();
        result.setInputCount(EncogFileSection.parseInt(params,
            PersistConst.INPUT_COUNT));
        result.getParams().C = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_C);
        result.getParams().cache_size = EncogFileSection.parseDouble(
            params, PersistSVM.PARAM_CACHE_SIZE);
        result.getParams().coef0 = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_COEF0);
        result.getParams().degree = EncogFileSection.parseInt(params,
            PersistSVM.PARAM_DEGREE);
        result.getParams().eps = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_EPS);
        result.getParams().gamma = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_GAMMA);
        result.getParams().kernel_type = EncogFileSection.parseInt(
            params, PersistSVM.PARAM_KERNEL_TYPE);
        result.getParams().nr_weight = EncogFileSection.parseInt(
            params, PersistSVM.PARAM_NUM_WEIGHT);
        result.getParams().nu = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_NU);
        result.getParams().p = EncogFileSection.parseDouble(params,
            PersistSVM.PARAM_P);
        result.getParams().probability = EncogFileSection.parseInt(
            params, PersistSVM.PARAM_PROBABILITY);
        result.getParams().shrinking = EncogFileSection.parseInt(
            params, PersistSVM.PARAM_SHRINKING);
        result.getParams().svm_type = EncogFileSection.parseInt(params,
            PersistSVM.PARAM_SVM_TYPE);
        result.getParams().weight = EncogFileSection.parseDoubleArray(
            params, PersistSVM.PARAM_WEIGHT);
        result.getParams().weight_label = EncogFileSection
            .parseIntArray(params, PersistSVM.PARAM_WEIGHT_LABEL);
      } else if (section.getSectionName().equals("SVM")
          && section.getSubSectionName().equals("SVM-MODEL")) {
        try {
          final StringReader rdr = new StringReader(
              section.getLinesAsString());
          final BufferedReader br = new BufferedReader(rdr);
          final svm_model model = svm.svm_load_model(br);
          result.setModel(model);
          br.close();
          rdr.close();
View Full Code Here

Examples of org.encog.persist.EncogFileSection

59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
   */
  @Override
  public final Object read(final InputStream is) {
    final SOM result = new SOM();
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("SOM")
          && section.getSubSectionName().equals("PARAMS")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      }
      if (section.getSectionName().equals("SOM")
          && section.getSubSectionName().equals("NETWORK")) {
        final Map<String, String> params = section.parseParams();
        result.setWeights(EncogFileSection.parseMatrix(params,
            PersistConst.WEIGHTS));
        result.setOutputNeuronCount(EncogFileSection.parseInt(params,
            PersistConst.OUTPUT_COUNT));
        result.setInputCount(EncogFileSection.parseInt(params,
View Full Code Here

Examples of org.encog.persist.EncogFileSection

138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
   */
  @Override
  public final Object read(final InputStream is) {

    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;
    final BasicMLDataSet samples = new BasicMLDataSet();
    Map<String, String> networkParams = null;
    PNNKernelType kernel = null;
    PNNOutputMode outmodel = null;
    int inputCount = 0;
    int outputCount = 0;
    double error = 0;
    double[] sigma = null;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("PNN")
          && section.getSubSectionName().equals("PARAMS")) {
        networkParams = section.parseParams();
      }
      if (section.getSectionName().equals("PNN")
          && section.getSubSectionName().equals("NETWORK")) {
        final Map<String, String> params = section.parseParams();
        inputCount = EncogFileSection.parseInt(params,
            PersistConst.INPUT_COUNT);
        outputCount = EncogFileSection.parseInt(params,
            PersistConst.OUTPUT_COUNT);
        kernel = PersistBasicPNN.stringToKernel(params
            .get(PersistConst.KERNEL));
        outmodel = PersistBasicPNN.stringToOutputMode(params
            .get(PersistBasicPNN.PROPERTY_outputMode));
        error = EncogFileSection
            .parseDouble(params, PersistConst.ERROR);
        sigma = EncogFileSection.parseDoubleArray(params,
            PersistConst.SIGMA);
      }
      if (section.getSectionName().equals("PNN")
          && section.getSubSectionName().equals("SAMPLES")) {
        for (final String line : section.getLines()) {
          final List<String> cols = EncogFileSection
              .splitColumns(line);
          int index = 0;
          final MLData inputData = new BasicMLData(inputCount);
          for (int i = 0; i < inputCount; i++) {
View Full Code Here

Examples of org.encog.persist.EncogFileSection

128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
      File file = new File(home, EncogWorkBench.CONFIG_FILENAME);
      InputStream is = new FileInputStream(file);
      EncogReadHelper in = new EncogReadHelper(is);
     
      // read the config file
      EncogFileSection section;
     
      while( (section = in.readNextSection()) != null ) {
        if( section.getSectionName().equals("ENCOG") && section.getSubSectionName().equals("TRAINING") ) {
          Map<String,String> params = section.parseParams();
          this.defaultError = EncogFileSection.parseDouble(params, EncogWorkBenchConfig.PROPERTY_DEFAULT_ERROR);
          this.threadCount = EncogFileSection.parseInt(params, EncogWorkBenchConfig.PROPERTY_THREAD_COUNT);
          this.useOpenCL = EncogFileSection.parseInt(params, EncogWorkBenchConfig.PROPERTY_THREAD_COUNT)>0;
          this.errorCalculation = EncogFileSection.parseInt(params, EncogWorkBenchConfig.PROPERTY_ERROR_CALC);
        }
View Full Code Here

Examples of org.encog.persist.EncogFileSection

298
299
300
301
302
303
304
305
306
307
308
   */
  public final void load(final InputStream stream) {
    EncogReadHelper reader = null;

    try {
      EncogFileSection section = null;
      reader = new EncogReadHelper(stream);

      while ((section = reader.readNextSection()) != null) {
        processSubSection(section);
      }
View Full Code Here

Examples of org.encog.persist.EncogFileSection

59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
   */
  @Override
  public Object read(final InputStream is) {
    final BAM result = new BAM();
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("BAM")
          && section.getSubSectionName().equals("PARAMS")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      }
      if (section.getSectionName().equals("BAM")
          && section.getSubSectionName().equals("NETWORK")) {
        final Map<String, String> params = section.parseParams();

        result.setF1Count(EncogFileSection.parseInt(params,
            PersistConst.PROPERTY_F1_COUNT));
        result.setF2Count(EncogFileSection.parseInt(params,
            PersistConst.PROPERTY_F2_COUNT));
View Full Code Here

Examples of org.encog.persist.EncogFileSection

75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
   */
  @Override
  public Object read(final InputStream is) {
    Map<String, String> networkParams = null;
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;
    int inputCount = 0;
    int instarCount = 0;
    int outputCount = 0;
    int winnerCount = 0;
    Matrix m1 = null;
    Matrix m2 = null;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("CPN")
          && section.getSubSectionName().equals("PARAMS")) {
        networkParams = section.parseParams();
      }
      if (section.getSectionName().equals("CPN")
          && section.getSubSectionName().equals("NETWORK")) {
        final Map<String, String> params = section.parseParams();

        inputCount = EncogFileSection.parseInt(params,
            PersistConst.INPUT_COUNT);
        instarCount = EncogFileSection.parseInt(params,
            PersistConst.INSTAR);
View Full Code Here

Examples of org.encog.persist.EncogFileSection

54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
   */
  @Override
  public final Object read(final InputStream is) {
    final BayesianNetwork result = new BayesianNetwork();
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;
    String queryType = "";
    String queryStr = "";
    String contentsStr = "";

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("BAYES-NETWORK")
          && section.getSubSectionName().equals("BAYES-PARAM")) {
        final Map<String, String> params = section.parseParams();
        queryType = params.get("queryType");
        queryStr = params.get("query");
        contentsStr = params.get("contents");
      }
      if (section.getSectionName().equals("BAYES-NETWORK")
          && section.getSubSectionName().equals("BAYES-TABLE")) {

        result.setContents(contentsStr);
       
        // first, define relationships (1st pass)
        for (String line : section.getLines()) {
          result.defineRelationship(line);
        }

        result.finalizeStructure();

        // now define the probabilities (2nd pass)
        for (String line : section.getLines()) {
          result.defineProbability(line);
        }
      }
      if (section.getSectionName().equals("BAYES-NETWORK")
          && section.getSubSectionName().equals("BAYES-PROPERTIES")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      }
    }

    // define query, if it exists
View Full Code Here

Examples of org.encog.persist.EncogFileSection

94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
    final EncogProgramContext context = new EncogProgramContext();

    final PrgPopulation result = new PrgPopulation(context, 0);

    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;

    int count = 0;
    Species lastSpecies = null;
    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("BASIC")
          && section.getSubSectionName().equals("PARAMS")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      } else if (section.getSectionName().equals("BASIC")
          && section.getSubSectionName().equals("EPL-POPULATION")) {
        for (final String line : section.getLines()) {
          final List<String> cols = EncogFileSection
              .splitColumns(line);

          if (cols.get(0).equalsIgnoreCase("s")) {
            lastSpecies = new BasicSpecies();
            lastSpecies.setAge(Integer.parseInt(cols.get(1)));
            lastSpecies.setBestScore(CSVFormat.EG_FORMAT.parse(cols
                .get(2)));
            lastSpecies.setPopulation(result);
            lastSpecies.setGensNoImprovement(Integer.parseInt(cols
                .get(3)));
            result.getSpecies().add(lastSpecies);
          } else if (cols.get(0).equalsIgnoreCase("p")) {
            double score = 0;
            double adjustedScore = 0;

            if (cols.get(1).equalsIgnoreCase("nan")
                || cols.get(2).equalsIgnoreCase("nan")) {
              score = Double.NaN;
              adjustedScore = Double.NaN;
            } else {
              score = CSVFormat.EG_FORMAT.parse(cols.get(1));
              adjustedScore = CSVFormat.EG_FORMAT.parse(cols
                  .get(2));
            }

            final String code = cols.get(3);
            final EncogProgram prg = new EncogProgram(context);
            prg.compileEPL(code);
            prg.setScore(score);
            prg.setSpecies(lastSpecies);
            prg.setAdjustedScore(adjustedScore);
            if (lastSpecies == null) {
              throw new EncogError(
                  "Have not defined a species yet");
            } else {
              lastSpecies.add(prg);
            }
            count++;
          }
        }
      } else if (section.getSectionName().equals("BASIC")
          && section.getSubSectionName().equals("EPL-OPCODES")) {
        for (final String line : section.getLines()) {
          final List<String> cols = EncogFileSection
              .splitColumns(line);
          final String name = cols.get(0);
          final int args = Integer.parseInt(cols.get(1));
          result.getContext().getFunctions().addExtension(name, args);
        }
      } else if (section.getSectionName().equals("BASIC")
          && section.getSubSectionName().equals("EPL-SYMBOLIC")) {
        boolean first = true;
        for (final String line : section.getLines()) {
          if (!first) {
            final List<String> cols = EncogFileSection
                .splitColumns(line);
            final String name = cols.get(0);
            final String t = cols.get(1);
View Full Code Here

Examples of org.encog.persist.EncogFileSection

59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
   */
  @Override
  public Object read(final InputStream is) {
    final ART1 result = new ART1();
    final EncogReadHelper in = new EncogReadHelper(is);
    EncogFileSection section;

    while ((section = in.readNextSection()) != null) {
      if (section.getSectionName().equals("ART1")
          && section.getSubSectionName().equals("PARAMS")) {
        final Map<String, String> params = section.parseParams();
        result.getProperties().putAll(params);
      }
      if (section.getSectionName().equals("ART1")
          && section.getSubSectionName().equals("NETWORK")) {
        final Map<String, String> params = section.parseParams();

        result.setA1(EncogFileSection.parseDouble(params,
            ART.PROPERTY_A1));
        result.setB1(EncogFileSection.parseDouble(params,
            ART.PROPERTY_B1));
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.