Package com.redhat.ceylon.tools.new_

Examples of com.redhat.ceylon.tools.new_.Variable

57
58
59
60
61
62
63
64
65
66
67
68
69
    // H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));

    // actually bogus - apparently all filters arre turned off
    // but its a test of filtered data with no filter actually applied
    NetcdfFile ncfile = TestH5.openH5("support/zip.h5");
    Variable v = ncfile.findVariable("Data/Compressed_Data");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1000;
    assert shape[1] == 20;

    Index ima = data.getIndex();
View Full Code Here
78
79
80
81
82
83
84
85
86
87
88
89
90
  public void test2() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));

    // probably bogus also, cant find any non-zero filtered variables
    NetcdfFile ncfile = TestH5.openH5("wrf/wrf_input_seq.h5");
    Variable v = ncfile.findVariable("DATASET=INPUT/GSW");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1;
    assert shape[1] == 20;
    assert shape[2] == 10;
  }
View Full Code Here
92
93
94
95
96
97
98
99
100
101
102
103
  public void testDeflate() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));
    NetcdfFile ncfile = TestH5.openH5("msg/MSG1_8bit_HRV.H5");

    // picture looks ok in ToolsUI
    Variable v = ncfile.findVariable("image1/image_data");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1000;
    assert shape[1] == 1500;
  }
View Full Code Here
105
106
107
108
109
110
111
112
113
114
115
116
  public void testMissing() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));
    NetcdfFile ncfile = TestH5.openH5("HIRDLS/HIRDLS2-AFGL_b027_na.he5");

    // picture looks ok in ToolsUI
    Variable v = ncfile.findVariable("HDFEOS/SWATHS/HIRDLS/Data Fields/Altitude");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 6;
    assert shape[1] == 145;
  }
View Full Code Here
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
      if ( !addAxisType( ds, "latitude", AxisType.Lat)) { // directly named

        String vname = ds.findAttValueIgnoreCase(null, "latitude_coordinate", null);
        if (!addAxisType( ds, vname, AxisType.Lat)) { // attribute named

          Variable v = hasUnits(ds, "degrees_north,degrees_N,degreesN,degree_north,degree_N,degreeN");
          if (v != null)
            addAxisType( v, AxisType.Lat); // CF-1
        }
      }
    }

    // longitude
    if (!hasAxisType( ds, AxisType.Lon)) { // already has _CoordinateAxisType

      if ( !addAxisType( ds, "longitude", AxisType.Lon)) { // directly named

        String vname = ds.findAttValueIgnoreCase(null, "longitude_coordinate", null);
        if (!addAxisType( ds, vname, AxisType.Lon)) { // attribute named

          Variable v = hasUnits(ds, "degrees_east,degrees_E,degreesE,degree_east,degree_E,degreeE");
          if (v != null)
            addAxisType( v, AxisType.Lon); // CF-1
        }
      }
    }
View Full Code Here
163
164
165
166
167
168
169
170
171
172
  }


  private boolean addAxisType(NetcdfDataset ds, String vname, AxisType a) {
    if (vname == null) return false;
    Variable v = ds.findVariable(vname);
    if (v == null) return false;
    addAxisType( v, a);
    return true;
  }
View Full Code Here
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
   } Compound String(10);
   */
  public void testStructureArray() throws IOException {
    NetcdfFile ncfile = TestH5.openH5("support/cstr.h5");

    Variable v = ncfile.findVariable("Compound String");
    assert( null != v);
    assert( v.getDataType() == DataType.STRUCTURE);
    assert( v instanceof Structure);
    assert( v.getRank() == 1);
    assert( v.getShape()[0] == 10);

      Array data = v.read();
      assert(data.getElementType() == StructureData.class);
      assert (data instanceof ArrayStructure);
      assert (data.getSize() == 10);
      assert (data.getRank() == 1);

View Full Code Here
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
   type = Layout(8);  type= 2 (chunked) storageSize = (3,16) dataSize=0 dataAddress=1576
   */
  public void testStructureArrayChunked() throws IOException {
    NetcdfFile ncfile = TestH5.openH5("support/cuslab.h5");

    Variable v = ncfile.findVariable("ArrayOfStructures");
    assert( null != v);
    assert( v.getDataType() == DataType.STRUCTURE);
    assert( v instanceof Structure);
    assert( v.getRank() == 1);
    assert( v.getShape()[0] == 30);

    Array data = null;
    try {
      data = v.read();
    } catch (IOException e) { assert false; } // */

    assert(data.getElementType() == StructureData.class);
    assert (data instanceof ArrayStructure);
    assert (data.getSize() == 30);
View Full Code Here
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
    type = Layout(8);  type= 1 (contiguous) storageSize = (10,16) dataSize=0 dataAddress=2048
   */
   public void testStructureWithArrayMember() throws IOException {
    NetcdfFile ncfile = TestH5.openH5("support/DSwith_array_member.h5");

    Variable v = ncfile.findVariable("ArrayOfStructures");
    v.setCaching(false);
    assert( null != v);
    assert( v.getDataType() == DataType.STRUCTURE);
    assert( v instanceof Structure);
    assert( v.getRank() == 1);
    assert( v.getShape()[0] == 10);

    try {
      Array data = v.read(new int[] {4}, new int[] {3});
      assert(data.getElementType() == StructureData.class);
      assert (data instanceof ArrayStructure);
      assert (data.getSize() == 3) : data.getSize();
      assert (data.getRank() == 1);

      int count = 0;
      IndexIterator iter = data.getIndexIterator();
      while (iter.hasNext()) {
        Object o = iter.next();
        assert (o instanceof StructureData);
        StructureData d = (StructureData) o;

        Array arr = d.getArray("a_name");
        assert (arr != null);
        assert (arr.getElementType() == int.class);
        assert (arr instanceof ArrayInt);
        assert (arr.getInt( arr.getIndex()) == 4 + count);
        NCdump.printArray( arr, "a_name", out, null);

        arr = d.getArray("b_name");
        assert (arr != null);
        assert (arr.getElementType() == float.class);
        assert (arr instanceof ArrayFloat);
        assert (arr.getSize() == 3);
        assert (arr.getFloat( arr.getIndex()) == (float) 4.0 + count);
        NCdump.printArray( arr, "b_name", out, null);

        count++;
      }

    }
    catch (InvalidRangeException e) { assert false; }
    catch (IOException e) { assert false; }

    try {
      Array data = v.read();
      assert(data.getElementType() == StructureData.class);
      assert (data instanceof ArrayStructure);
      assert (data.getSize() == 10);
      assert (data.getRank() == 1);

View Full Code Here
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
        Dimension dimT = new Dimension("time", 1, true, false, false);

        ncfile.addDimension(null, dimT);

        String   timeCoordName = "time";
        Variable taxis         = new Variable(ncfile, null, null, timeCoordName);

        taxis.setDataType(DataType.DOUBLE);
        taxis.setDimensions("time");
        taxis.addAttribute(new Attribute("long_name", "time since base date"));
        taxis.addAttribute(new Attribute(_Coordinate.AxisType, AxisType.Time.toString()));

        double[] tdata = new double[1];

        tdata[0] = dd.getTime();

        Array dataT = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] { 1 }, tdata);

        taxis.setCachedData(dataT, false);

        DateFormatter formatter = new DateFormatter();

        taxis.addAttribute(new Attribute("units", "msecs since " + formatter.toDateTimeStringISO(new Date(0))));
        ncfile.addVariable(null, taxis);
        dims.add(dimT);

        Dimension jDim = new Dimension("y", numY, true, false, false);
        Dimension iDim = new Dimension("x", numX, true, false, false);

        dims.add(jDim);
        dims.add(iDim);
        ncfile.addDimension(null, iDim);
        ncfile.addDimension(null, jDim);
        ncfile.addAttribute(null, new Attribute("cdm_data_type", FeatureType.GRID.toString()));

        String   coordinates = "time y x";
        Variable v           = new Variable(ncfile, null, null, cname);

        v.setDataType(DataType.BYTE);
        v.setDimensions(dims);
        ncfile.addVariable(null, v);
        v.addAttribute(new Attribute("long_name", ctitle));
        v.addAttribute(new Attribute("units", cunit));
        v.setSPobject(new Vinfo(numX, numY, hoff, false));
        v.addAttribute(new Attribute(_Coordinate.Axes, coordinates));

        // create coordinate variables
        Variable xaxis = new Variable(ncfile, null, null, "x");

        xaxis.setDataType(DataType.DOUBLE);
        xaxis.setDimensions("x");
        xaxis.addAttribute(new Attribute("standard_name", "projection x coordinate"));
        xaxis.addAttribute(new Attribute("units", "km"));
        xaxis.addAttribute(new Attribute(_Coordinate.AxisType, "GeoX"));

        double[]       data1      = new double[numX];
        ProjectionImpl projection = new LambertConformal(clat, clon, lat1, lat2);
        double ullat = 51.8294;
        double ullon = -135.8736;
        double lrlat = 17.2454;
        double lrlon = -70.1154;

        ProjectionPointImpl ptul = (ProjectionPointImpl) projection.latLonToProj(new LatLonPointImpl(ullat, ullon));
        ProjectionPointImpl ptlr = (ProjectionPointImpl) projection.latLonToProj(new LatLonPointImpl(lrlat, lrlon));
        ProjectionPointImpl ptc = (ProjectionPointImpl) projection.latLonToProj(new LatLonPointImpl(clat, clon));
        double startX = ptul.getX();
        double startY = ptlr.getY();
        double dx = (ptlr.getX() - ptul.getX())/(numX-1);
        for (int i = 0; i < numX; i++) {
            data1[i] = startX + i*dx;
        }

        Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] { numX }, data1);

        xaxis.setCachedData(dataA, false);
        ncfile.addVariable(null, xaxis);

        Variable yaxis = new Variable(ncfile, null, null, "y");

        yaxis.setDataType(DataType.DOUBLE);
        yaxis.setDimensions("y");
        yaxis.addAttribute(new Attribute("standard_name", "projection y coordinate"));
        yaxis.addAttribute(new Attribute("units", "km"));
        yaxis.addAttribute(new Attribute(_Coordinate.AxisType, "GeoY"));
        data1 = new double[numY];
        double dy = (ptul.getY() - ptlr.getY())/(numY-1);

        for (int i = 0; i < numY; i++) {
            data1[i] = startY + i*dy;
        }

        dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] { numY }, data1);
        yaxis.setCachedData(dataA, false);
        ncfile.addVariable(null, yaxis);

        // projection
        // lower left and upper right corner lat/lons
        // modified cylind. equidistant or  CED with lat/lon ration != 1
        Variable ct = new Variable(ncfile, null, null, projection.getClassName());

        ct.setDataType(DataType.CHAR);
        ct.setDimensions("");

        List params = projection.getProjectionParameters();

        for (int i = 0; i < params.size(); i++) {
            Parameter p = (Parameter) params.get(i);

            ct.addAttribute(new Attribute(p));
        }

        ct.addAttribute(new Attribute(_Coordinate.TransformType, "Projection"));
        //ct.addAttribute(new Attribute(_Coordinate.Axes, "lat lon"));
        ct.addAttribute( new Attribute(_Coordinate.Axes, "x y "));
        // fake data
        dataA = Array.factory(DataType.CHAR.getPrimitiveClassType(), new int[] {});
        dataA.setChar(dataA.getIndex(), ' ');
        ct.setCachedData(dataA, false);
        ncfile.addVariable(null, ct);

        return projection;
    }
View Full Code Here
TOP

Related Classes of com.redhat.ceylon.tools.new_.Variable

  • cnslab.cnsnetwork.PlotResult
  • com.intellij.psi.PsiElement
  • com.redhat.ceylon.tools.new_.Template
  • com.redhat.ceylon.tools.new_.TemplateTest
  • net.sf.mzmine.modules.rawdatamethods.rawdataimport.fileformats.NetCDFReadTask
  • org.eclipse.php.internal.core.codeassist.templates.CodeCompletionRequestor
  • org.geoserver.wcs.responses.NetCDFOutputManager
  • org.geppetto.core.simulator.UpdateRecordingStateTreeVisitor
  • ucar.nc2.dataset.conv.CEDRICRadarConvention
  • ucar.nc2.dataset.conv.DefaultConvention
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.