Examples of CellPointerUnrecognizedTypeException

Examples of org.lightforge.bioinformatics.alignment.dp.CellPointerUnrecognizedTypeException

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            alignment.set_startTargetPosition(originCell.get_column());   
            alignment.set_finalTargetPosition(originCell.get_column());   
            traceBack((SdpaCell)cp.get_cell(), alignment);
            break;
          default:
            throw new CellPointerUnrecognizedTypeException(cp.get_type().toString());
          }
        }     
      }
    }
  }
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Examples of org.lightforge.bioinformatics.alignment.dp.CellPointerUnrecognizedTypeException

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            alignment.set_startTargetPosition(originCell.get_column());   
            alignment.set_finalTargetPosition(originCell.get_column());   
            traceBack((SdpaCell)cp.get_cell(), alignment);
            break;
          default:
            throw new CellPointerUnrecognizedTypeException(cp.get_type().toString());
          }

          parentAlignment.set_open(alignment.is_open());
        }     
      }
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Examples of org.lightforge.bioinformatics.alignment.dp.CellPointerUnrecognizedTypeException

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          break;
        case MATCH:
          returnStringBuffer.append('M');
          break;
        default:
          throw new CellPointerUnrecognizedTypeException(cp.get_type().toString());
        }
      }     
    }

    return returnStringBuffer.toString();
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