Examples of AlignmentManager

Examples of edu.isi.karma.modeling.alignment.AlignmentManager

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    SuperSelection selection = getSuperSelection(wk);
    // Clone the worksheet just before the invocation
    Cloner cloner = new Cloner();
    this.worksheetBeforeInvocation = cloner.deepClone(wk);

    AlignmentManager mgr = AlignmentManager.Instance();
    String alignmentId = mgr.constructAlignmentId(workspace.getId(), worksheetId);
    Alignment al = mgr.getAlignment(alignmentId);
   
//    /**
//     *
//     */
//    // FIXME
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Examples of edu.isi.karma.modeling.alignment.AlignmentManager

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      if (null == historyJson || historyJson.length() == 0) {
        return new UpdateContainer(new ErrorUpdate("No history found in R2RML Model!"));
      }
      WorksheetCommandHistoryExecutor histExecutor = new WorksheetCommandHistoryExecutor(
          worksheetId, workspace);
      AlignmentManager alignMgr = AlignmentManager.Instance();
      Alignment alignment = alignMgr.getAlignment(workspace.getId(), worksheetId);
      if (override || alignment == null || alignment.GetTreeRoot() == null) {
        String alignmentId = alignMgr.constructAlignmentId(workspace.getId(), worksheetId);
        alignMgr.removeAlignment(alignmentId);
        alignMgr.getAlignmentOrCreateIt(workspace.getId(), worksheetId, workspace.getOntologyManager());
        editor.deleteExistingTransformationCommands();
        historyJson = editor.getHistoryJSON();
      }
      else {
        editor.deleteExistingTransformationAndModelingCommands();
        historyJson = editor.getHistoryJSON();
      }
      System.out.println(editor.getHistoryJSON().toString(4));
      UpdateContainer hc = histExecutor.executeAllCommands(historyJson);
      if(hc != null) {
        hc.removeUpdateByClass(HistoryAddCommandUpdate.class);
        hc.removeUpdateByClass(InfoUpdate.class);
        hc.removeUpdateByClass(ErrorUpdate.class);
        hc.removeUpdateByClass(AlignmentSVGVisualizationUpdate.class);
        c.append(hc);
      }
      alignment = alignMgr.getAlignment(workspace.getId(), worksheetId);
      if(alignment != null)
        c.add(new AlignmentSVGVisualizationUpdate(worksheetId, alignment));
    } catch (Exception e) {
      String msg = "Error occured while applying history!";
      logger.error(msg, e);
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Examples of edu.isi.karma.modeling.alignment.AlignmentManager

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//      return new UpdateContainer(new ErrorUpdate(
//        "Error occured while publishing the model. The worksheet does not have a service object."));
    } else
      service = wk.getMetadataContainer().getService();
   
    AlignmentManager mgr = AlignmentManager.Instance();
    String alignmentId = mgr.constructAlignmentId(workspace.getId(), worksheetId);
    Alignment al = mgr.getAlignment(alignmentId);
   
    if (al == null) {
      logger.error("The alignment model is null.");
      if (service == null)
        return new UpdateContainer(new ErrorUpdate(
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