/**
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
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package org.apache.ctakes.lvg.test;
import static org.junit.Assert.*;
import java.io.IOException;
import java.net.URISyntaxException;
import java.util.ArrayList;
import java.util.List;
import org.apache.ctakes.core.ae.SentenceDetector;
import org.apache.ctakes.core.ae.SimpleSegmentAnnotator;
import org.apache.ctakes.core.ae.TokenizerAnnotatorPTB;
import org.apache.ctakes.lvg.ae.LvgAnnotator;
import org.apache.ctakes.typesystem.type.syntax.WordToken;
import org.apache.uima.UIMAException;
import org.apache.uima.analysis_engine.AnalysisEngineDescription;
import org.apache.uima.jcas.JCas;
import org.apache.uima.resource.ResourceInitializationException;
import org.junit.Test;
import org.uimafit.factory.AggregateBuilder;
import org.uimafit.factory.JCasFactory;
import org.uimafit.pipeline.SimplePipeline;
import org.uimafit.util.JCasUtil;
public class TestLvgAnnotator {
public static final String note = "" +
"Medications:\n" +
"Hibernol, jamitol, triopenin, sproingo\n\n" +
"Physical exam:\n" +
"Patient is doing fine but probably taking too many fictional drugs. Cholesterol is acceptable. Heartrate is elevated. \n" +
"Instructions:\n" +
"Patient should quit smoking and taunting sharks.";
@Test
public void testLvgAnnotator() throws UIMAException, IOException, URISyntaxException{
JCas jcas = JCasFactory.createJCas();
jcas.setDocumentText(note);
SimplePipeline.runPipeline(jcas, getDefaultPipeline());
List<WordToken> tokens = new ArrayList<>(JCasUtil.select(jcas, WordToken.class));
assertEquals("Incorrect canonical form!", "medication", tokens.get(0).getCanonicalForm());
assertTrue(tokens.get(29).getCanonicalForm() == null);
}
public static AnalysisEngineDescription getPrerequisitePipeline() throws ResourceInitializationException{
AggregateBuilder builder = new AggregateBuilder();
builder.add(SimpleSegmentAnnotator.createAnnotatorDescription());
builder.add(SentenceDetector.createAnnotatorDescription());
builder.add(TokenizerAnnotatorPTB.createAnnotatorDescription());
return builder.createAggregateDescription();
}
public static AnalysisEngineDescription getDefaultPipeline() throws ResourceInitializationException, URISyntaxException{
AggregateBuilder builder = new AggregateBuilder();
builder.add(getPrerequisitePipeline());
builder.add(LvgAnnotator.createAnnotatorDescription());
return builder.createAggregateDescription();
}
}