/**
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
package org.mitre.medfacts.uima;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.net.URI;
import java.net.URISyntaxException;
import org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine;
import org.apache.uima.analysis_engine.AnalysisEngineDescription;
import org.apache.uima.resource.ResourceInitializationException;
import org.uimafit.factory.AggregateBuilder;
import org.uimafit.factory.AnalysisEngineFactory;
import org.xml.sax.SAXException;
public class CreateZonerDescriptor
{
/**
* @param args
* @throws URISyntaxException
* @throws FileNotFoundException
* @throws ResourceInitializationException
*/
public static void main(String[] args) throws Exception
{
CreateZonerDescriptor creator = new CreateZonerDescriptor();
creator.execute();
}
public void execute() throws Exception
{
AggregateBuilder builder = new AggregateBuilder();
// AnalysisEngineDescription documentIdPrinter =
// AnalysisEngineFactory.createPrimitiveDescription(DocumentIdPrinterAnalysisEngine.class);
// builder.add(documentIdPrinter);
URI generalSectionRegexFileUri =
this.getClass().getClassLoader().getResource("org/mitre/medfacts/uima/section_regex.xml").toURI();
// ExternalResourceDescription generalSectionRegexDescription = ExternalResourceFactory.createExternalResourceDescription(
// SectionRegexConfigurationResource.class, new File(generalSectionRegexFileUri));
AnalysisEngineDescription zonerAnnotator =
AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
generalSectionRegexFileUri
);
builder.add(zonerAnnotator);
URI mayoSectionRegexFileUri =
this.getClass().getClassLoader().getResource("org/mitre/medfacts/uima/mayo_sections.xml").toURI();
// ExternalResourceDescription mayoSectionRegexDescription = ExternalResourceFactory.createExternalResourceDescription(
// SectionRegexConfigurationResource.class, new File(mayoSectionRegexFileUri));
AnalysisEngineDescription mayoZonerAnnotator =
AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
mayoSectionRegexFileUri
);
builder.add(mayoZonerAnnotator);
FileOutputStream outputStream = new FileOutputStream("desc/aggregateAssertionZoner.xml");
AnalysisEngineDescription description = builder.createAggregateDescription();
description.toXML(outputStream);
}
}