// double[] thresholds = {3,5,7};
Sequence word = new Sequence("ACAGTGACAA");
DiPWM dipwm = DiPWM.fromPWM(pwm); // A way to transform mono-nucleotide to di matrix
System.out.println(pwm.score(word));
System.out.println(dipwm.score(word));
//DiPWM dipwm_2 = new DiPWMImporter().loadMotif("test_data/dipwm/AP2A.di"));
run_mono_and_di(pwm, new WordwiseBackground(), discretizer, max_hash_size, threshold);