Examples of org.openbel.framework.common.protonetwork.model.ProtoEdgeTable.addEdges()

Package org.openbel.framework.common.protonetwork.model

Class org.openbel.framework.common.protonetwork.model.ProtoEdgeTable

Examples of org.openbel.framework.common.protonetwork.model.ProtoEdgeTable.addEdges()

org.openbel.framework.common.protonetwork.model.ProtoEdgeTable.addEdges()
Adds 1 or more {@link TableProtoEdge proto edges} to the table andassociates them with the supporting {@link TableStatement statement}index.
There must be at least one {@link TableProtoEdge proto edge} toassociate to a statement otherwise an exception is thrown.
@param stmt the {@link TableStatement statement} index to associate the{@link TableProtoEdge proto edges} to, which cannot be null @param newEdges the {@link TableProtoEdge proto edges} array to add tothe table, which cannot be null or have a length less than 1 @throws InvalidArgument May be thrown if stmt is null,newEdges is null, or newEdges is <= 0

        final TableProtoEdge edge1 = new TableProtoEdge(1, "INCREASES", 2);
        final TableProtoEdge edge2 =
                new TableProtoEdge(1, "DIRECTLY_DECREASES", 3);


        // for statement 0 add both edges in one call
        tbl.addEdges(0, edge1, edge2);


        // we should have one statement (0)
        assertThat(tbl.getStatementEdges().size(), is(1));


        // we should have two edges (0 and 1)

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        final TableProtoEdge edge1 = new TableProtoEdge(1, "INCREASES", 2);
        final TableProtoEdge edge2 =
                new TableProtoEdge(1, "DIRECTLY_DECREASES", 3);


        // for statement 0 add both edges in subsequent calls
        tbl.addEdges(0, edge1);
        tbl.addEdges(0, edge2);


        // we should have one statement (0)
        assertThat(tbl.getStatementEdges().size(), is(1));

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        final TableProtoEdge edge2 =
                new TableProtoEdge(1, "DIRECTLY_DECREASES", 3);


        // for statement 0 add both edges in subsequent calls
        tbl.addEdges(0, edge1);
        tbl.addEdges(0, edge2);


        // we should have one statement (0)
        assertThat(tbl.getStatementEdges().size(), is(1));


        // we should have two edges (0 and 1)

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    public void testDuplicateEdges() {
        final ProtoEdgeTable tbl = new ProtoEdgeTable();


        // for statement 0, add edge triple "1 HAS_COMPONENT 2"
        final TableProtoEdge edge1 = new TableProtoEdge(1, "HAS_COMPONENT", 2);
        tbl.addEdges(0, edge1);


        // for statement 1, add the same edge
        final TableProtoEdge edge2 = new TableProtoEdge(1, "HAS_COMPONENT", 2);
        tbl.addEdges(1, edge2);

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        final TableProtoEdge edge1 = new TableProtoEdge(1, "HAS_COMPONENT", 2);
        tbl.addEdges(0, edge1);


        // for statement 1, add the same edge
        final TableProtoEdge edge2 = new TableProtoEdge(1, "HAS_COMPONENT", 2);
        tbl.addEdges(1, edge2);


        // we should have two statements (0 and 1)
        assertThat(tbl.getStatementEdges().size(), is(2));


        // we should have two edges (0 and 1)

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        // add object as term and proto node
        final Term object = stmt.getObject().getTerm();
        final Integer objectIndex = createNode(object, supporting, pn, pnb);


        final ProtoEdgeTable pet = pn.getProtoEdgeTable();
        pet.addEdges(supporting, new ProtoEdgeTable.TableProtoEdge(sourceIndex,
                stmt.getRelationshipType().getDisplayValue(), objectIndex));
    }
}

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            remappedEdges[i++] = new TableProtoEdge(newSource, edge.getRel(),
                    newTarget);
        }
        ProtoEdgeTable edgeTable = protoNetwork1.getProtoEdgeTable();
        edgeTable.addEdges(newStatementIndex, remappedEdges);
    }


    /**
     * Merge the term into the first {@link ProtoNetwork}
     * <tt>protoNetwork1</tt>.

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