Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doAnalysis()

Package org.moltools.apps.probemaker.modules

Class org.moltools.apps.probemaker.modules.ProbeAnalysisModule

Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doAnalysis()

org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doAnalysis()
Check the probe against other probes and add messaged to this probe accordingly. Call the TagAllocator's setCurrentTagBad method to disqualify a tag for further use in this probe

  public static void analyzeProbe(Probe p, List<CandidateAnalysisModule> modules, TagAllocator pd, DefiniteSequenceDB<Probe> probeset) {


    for (Iterator<CandidateAnalysisModule> i = modules.iterator();i.hasNext();) {
      ProbeAnalysisModule am = (ProbeAnalysisModule) i.next();
      //am.reset(pd,probeset);
      am.doAnalysis(p, pd, probeset);
    } 
    calculateAndSetQuality(p);
  }

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  public static void analyzeProbe(Probe p, List<CandidateAnalysisModule> modules, TagAllocator pd, DefiniteSequenceDB<Probe> probeset) {


    for (Iterator<CandidateAnalysisModule> i = modules.iterator();i.hasNext();) {
      ProbeAnalysisModule am = (ProbeAnalysisModule) i.next();
      //am.reset(pd,probeset);
      am.doAnalysis(p, pd, probeset);
    } 
    calculateAndSetQuality(p);
  }

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