Package org.moltools.apps.probemaker.design

Examples of org.moltools.apps.probemaker.design.TSSConstructor.addParameters()

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        //Create and start the ProbeDesignerRunner
        TagAllocator ta = (TagAllocator) ProbeMakerPlugIn.defaultTagAllocatorClass.newInstance();
        TSSConstructor tsc = (TSSConstructor) ProbeMakerPlugIn.defaultTSSConstructorClass.newInstance();

        ta.addParameters(s.getDesignParameters());
        tsc.addParameters(s.getDesignParameters());

        ProbeDesigner pd = new DefaultProbeDesigner(ta);
        TSSPairDesigner td = new DefaultTSSPairDesigner(tsc);
        NamingScheme namer = new DefaultNamingScheme();
        DesignLogWriter log = new TextDesignLogWriter(new FileWriter(new File(logPath, p.getName() + ".designlog")));
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        //Create and start the ProbeDesignerRunner
        TagAllocator ta = (TagAllocator) ProbeMakerPlugIn.defaultTagAllocatorClass.newInstance();
        TSSConstructor tsc = (TSSConstructor) ProbeMakerPlugIn.defaultTSSConstructorClass.newInstance();

        ta.addParameters(s.getDesignParameters());
        tsc.addParameters(s.getDesignParameters());

        ProbeDesigner pd = new DefaultProbeDesigner(ta);

        ProbeDesignTask runner = pm.getProbeDesignTask(append,false,true,acceptor,selector,pd, tsc, callback);
        runner.timing = true;
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