Examples of org.cipres.treebase.domain.tree.PhyloTree.addTreeNode()

Class org.cipres.treebase.domain.tree.PhyloTree

Examples of org.cipres.treebase.domain.tree.PhyloTree.addTreeNode()

org.cipres.treebase.domain.tree.PhyloTree.addTreeNode()
Append a new Tree node. Creation date: Mar 14, 2006 @param pTreeNode

        // phyloTree.setTreeAttribute(pNewTreeAttribute);
        // phyloTree.setTreeQuality(pNewTreeQuality);


        int rootIndex = mesqTree.getRoot();
        PhyloTreeNode rootNode = createNode(mesqTree, null, rootIndex);
        phyloTree.addTreeNode(rootNode);
        phyloTree.setRootNode(rootNode);


        treeTraversal(mesqTree, rootIndex, rootNode);


        phyloTree.updateSubtreeBounds();

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    tree.setTitle(newName);
    tree.setLabel(newName);
    tree.setNexusFileName(null);


    PhyloTreeNode rootNode = new PhyloTreeNode();
    tree.addTreeNode(rootNode);
    tree.setRootNode(rootNode);


    PhyloTreeNode node1 = new PhyloTreeNode();
    rootNode.addChildNode(node1);

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    tree.setTitle(newName);
    tree.setLabel(newName);
    tree.setNexusFileName(null);


    PhyloTreeNode rootNode = new PhyloTreeNode();
    tree.addTreeNode(rootNode);
    tree.setRootNode(rootNode);


    PhyloTreeNode node1 = new PhyloTreeNode();
    rootNode.addChildNode(node1);

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    // tree2:
    PhyloTree tree2 = new PhyloTree();
    tree2.setLabel(newName + "2");
    PhyloTreeNode node21 = new PhyloTreeNode();
    tree2.addTreeNode(node21);
    tree2.setRootNode(node21);


    // treeblock:
    TreeBlock block = new TreeBlock();
    block.setTitle(newName);

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