Package org.broadinstitute.gatk.utils.sam

Examples of org.broadinstitute.gatk.utils.sam.GATKSAMRecord.simplify()


        for ( final ReadTransformer transformer : readTransformers ) {
            workingRead = transformer.apply(workingRead);
        }

        if ( simplifyReads ) workingRead = workingRead.simplify();

        return workingRead;
    }

    /**
 
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