Package htsjdk.tribble.util

Examples of htsjdk.tribble.util.LittleEndianOutputStream.writeString()

76
77
78
79
80
81
82
83
84
85
86
            // Placeholder for index position
            peakWriter.writeLong(0l);

            // Track line
            peakWriter.writeString("track name=" + factor + " sample=" + factor + " viewLimits=0:100 useScore=1 color=" + c);

            // Time values
            int nTimePoints = times.size();
            peakWriter.writeInt(nTimePoints);
            for (int i = 0; i < times.size(); i++) {
View Full Code Here
87
88
89
90
91
92
93
94
95
96
97
                peakWriter.writeInt(times.get(i));
            }

            // Path to associated signal ("tdf") files
            String tdf = root + "/tdf/compressed/" + factor + ".merged.bam.tdf";
            peakWriter.writeString(tdf);
            for (int t : times) {
                peakWriter.writeString(root + "/tdf/timecourses/" + factor + "_" + t + "/" + factor + "_" + t + ".merged.bam.tdf");
            }

View Full Code Here
89
90
91
92
93
94
95
96
97
98
99
            // Path to associated signal ("tdf") files
            String tdf = root + "/tdf/compressed/" + factor + ".merged.bam.tdf";
            peakWriter.writeString(tdf);
            for (int t : times) {
                peakWriter.writeString(root + "/tdf/timecourses/" + factor + "_" + t + "/" + factor + "_" + t + ".merged.bam.tdf");
            }


            // Process bed records
            String currentChr = "";
View Full Code Here
149
150
151
152
153
154
155
156
157
158
159
            // Write out index
            indexPosition = peakWriter.getWrittenCount();
            peakWriter.writeInt(chrIndex.size());
            for (Map.Entry<String, Long> entry : chrIndex.entrySet()) {
                peakWriter.writeString(entry.getKey());
                peakWriter.writeLong(entry.getValue());
            }

        } finally {
            if (peakWriter != null) {
View Full Code Here
53
54
55
56
57
58
59
60
61
62
63
    static void createTestFile() throws IOException {

        LittleEndianOutputStream los = new LittleEndianOutputStream(new BufferedOutputStream(new FileOutputStream("les_test.bin")));

        los.writeString("Binary test file");
        los.writeFloat(Float.MAX_VALUE);
        los.writeByte(Byte.MAX_VALUE);
        los.writeShort(Short.MAX_VALUE);
        los.writeInt(Integer.MAX_VALUE);
        los.writeLong(Long.MAX_VALUE);
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.