Package edu.umd.hooka.alignment.aer

Examples of edu.umd.hooka.alignment.aer.ReferenceAlignment.align()

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    assertTrue(c.aligned(0, 1));
  }
 
  public void testReference() {
    ReferenceAlignment ra = new ReferenceAlignment(4,5);
    ra.align(0, 0);
    ra.sureAlign(1, 1);
    ra.sureAlign(3, 4);
    ra.align(2, 4);
   
    Alignment a = new Alignment(4,5);
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  public void testReference() {
    ReferenceAlignment ra = new ReferenceAlignment(4,5);
    ra.align(0, 0);
    ra.sureAlign(1, 1);
    ra.sureAlign(3, 4);
    ra.align(2, 4);
   
    Alignment a = new Alignment(4,5);
    a.align(0, 1);
    a.align(1, 1);
    a.align(2, 4);
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