Package com.googlecode.gaal.data.impl

Examples of com.googlecode.gaal.data.impl.TreeMapCorpus.sequence()

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        // String[] alphabet = { null, "a", "c", "g", "t", "#" };

        Tokenizer<String> tokenizer = new RegexTokenizer(sr, "[\\W\\w]", new LowerCaseNormalizer());
        Corpus<String> corpus = new TreeMapCorpus(tokenizer, alphabet);
        System.out.println("alphabet size " + corpus.alphabetSize());
        System.out.println("text size " + corpus.sequence().size());
        System.out.println("text " + corpus.sequence());
        System.out.println("alphabet " + corpus.alphabet());
        Iterator<String> iter = corpus.iterator(corpus.sequence());
        while (iter.hasNext())
            System.out.print(iter.next());
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        Tokenizer<String> tokenizer = new RegexTokenizer(sr, "[\\W\\w]", new LowerCaseNormalizer());
        Corpus<String> corpus = new TreeMapCorpus(tokenizer, alphabet);
        System.out.println("alphabet size " + corpus.alphabetSize());
        System.out.println("text size " + corpus.sequence().size());
        System.out.println("text " + corpus.sequence());
        System.out.println("alphabet " + corpus.alphabet());
        Iterator<String> iter = corpus.iterator(corpus.sequence());
        while (iter.hasNext())
            System.out.print(iter.next());
        System.out.println();
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        Corpus<String> corpus = new TreeMapCorpus(tokenizer, alphabet);
        System.out.println("alphabet size " + corpus.alphabetSize());
        System.out.println("text size " + corpus.sequence().size());
        System.out.println("text " + corpus.sequence());
        System.out.println("alphabet " + corpus.alphabet());
        Iterator<String> iter = corpus.iterator(corpus.sequence());
        while (iter.hasNext())
            System.out.print(iter.next());
        System.out.println();

        Iterator<String> revIter = corpus.iterator(corpus.sequence().reverse());
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        Iterator<String> iter = corpus.iterator(corpus.sequence());
        while (iter.hasNext())
            System.out.print(iter.next());
        System.out.println();

        Iterator<String> revIter = corpus.iterator(corpus.sequence().reverse());
        while (revIter.hasNext())
            System.out.print(revIter.next());
        System.out.println();

        // LinearizedSuffixTree sa = new KimLinearizedSuffixTree(
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